Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1462 ATGGCTAAGCATGATGTTGAGGGTGGTTCCTTCTATGCAAAGGACTACCATGATCCTCCTCCAGCTGGTGAGGAACTCACACAGTGGTCCTTCTACAGGGCCGTGATTGCGGAGTTCATTGCCACACTGCTCTTCCTTTACATCACAGTGCTCACTGTTATTGGTTACAAGAGCCAGAGTGATGTAAACGCTGGGGGTGATCTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGACCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACTTTTGGACTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGGGCTATAATGTACATGGTGGCTCAGTGCTTGGGGGCCATATGTGGAGTTGGGTTGGTGAAGGCCTTCCAAAAGGCTTACTACCACAGGTATGGTGGTGGGGCCAATGAGTTGAGTGAAGGGTACAGCACAGGTGTTGGATTGGGTGCAGAGATCATTGGAACCTTCGTTTTGGTGTACACTGTCTTCTCTACTACAGACCCCAAGAGGAATGCTAGAGATTCTTATGTCCCGGTTTTGGCGCCACTTCCAATTGGTTTTGCTGTGTTCATGGTCCACTTGGCAACCATACCTGTAACTGGCACTGGTATTAACCCTGCTAGAAGTTTTGGAGCTGCTGTCATATACAACAAAGAGAAGGCCTGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGAGCAGGTGCTGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACCATTTGA 846 0.4953 MAKHDVEGGSFYAKDYHDPPPAGEELTQWSFYRAVIAEFIATLLFLYITVLTVIGYKSQSDVNAGGDLCGGVGILGIAWAFGGMTFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKAYYHRYGGGANELSEGYSTGVGLGAEIIGTFVLVYTVFSTTDPKRNARDSYVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKEKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTI* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1462 281 SUPERFAMILY Aquaporin-like 25 265 IPR023271 -
Vra1g1462 281 TIGRFAM MIP: MIP family channel proteins 37 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 Pfam Major intrinsic protein 25 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 PANTHER AQUAPORIN PIP2-4-RELATED 8 278 - -
Vra1g1462 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Vra1g1462 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 278 IPR034294 -
Vra1g1462 281 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 CDD MIP 33 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1462 281 Gene3D Glycerol uptake facilitator protein. 22 281 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1462 Vra-Chr1 22556120 22559503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1462 1 277 Major Intrinsic Protein MIP AT2G37170 83.688 6.03e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1462 K09872 - gmx:547857 538.495