Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1456 ATGATCGGAAACTTCATTGACGACATTGATTGCGGCAGCTTCTTCGACCACATAGACGACCTCCTCGAATTTCCTGCTGAAGAAACAGCAGCTGTCACTGACACTACTGTTGTTACACCGGTTGCTCCTCCTCCGACAAACTTCTGGTCCACAGAATCTGACTCGCTGCATGCCACCAATACGGTGTTTTCCGGCAATACTGTGCCGGACCTCTCGACAGAACTCTCTGTTCCGTTTGAAGACATTGAACAATTGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGTCTCACCATGCAGCAAGAGCAGCCACAATGCACCAACAAGGAGGACACAACTCATGCTCAATTCCAGACAGCAAGTCCAGTTTCTGTCCTTGAAAGTAGCAGTTTTTACTCCAGAACGAAGGCTGCATCTCGTAACACGGAGATTTACATCCCCGTGCCATGTGGACGTGCACGTAGCAAGCGTGCACGTCCTGCAGCCTTCAATCCCTATCCAGTTATGCAGCTGATCTCGCCAGCGTCTTCCACTGGCGAGAATACACAGCACAACACCACCTCCTCCAAGACCTCGTCAGACTCTGAGAATTTCGCTGAATCCACCGTCAAGCCACCAAAACAGGCCTCTGGTGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCAGGTGGTGAAGACCACAATGCTACAGCATCACAGGCAGTGAGAAAATGTGTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAACGCTTGTGGCGTGCGCTACAAGTCAGGGCGCCTCTTCCCCGAATACCGGCCGGCTGCCAGTCCGACGTTCTGTGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAGACAGGCCCCAAATCTGGTTTTGCAGCAGATTCAGCTTCCTCACCAGAACTTATTCCAAACACTAACAGCAGCCTTTCCCTGGAATACATGTGA 1017 0.5064 MIGNFIDDIDCGSFFDHIDDLLEFPAEETAAVTDTTVVTPVAPPPTNFWSTESDSLHATNTVFSGNTVPDLSTELSVPFEDIEQLEWLSNFVEDSFSGGSLTMQQEQPQCTNKEDTTHAQFQTASPVSVLESSSFYSRTKAASRNTEIYIPVPCGRARSKRARPAAFNPYPVMQLISPASSTGENTQHNTTSSKTSSDSENFAESTVKPPKQASGEHKKKKKIKVTFSGGEDHNATASQAVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTGPKSGFAADSASSPELIPNTNSSLSLEYM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1456 338 PANTHER GATA TRANSCRIPTION FACTOR 8 1 338 - -
Vra1g1456 338 MobiDBLite consensus disorder prediction 176 208 - -
Vra1g1456 338 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Vra1g1456 338 MobiDBLite consensus disorder prediction 176 222 - -
Vra1g1456 338 CDD ZnF_GATA 243 290 IPR000679 GO:0006355|GO:0043565
Vra1g1456 338 PIRSF Txn_fac_GATA_plant 2 332 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra1g1456 338 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Vra1g1456 338 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Vra1g1456 338 PANTHER GATA TRANSCRIPTION FACTOR 1 338 - -
Vra1g1456 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 301 - -
Vra1g1456 338 Gene3D - 238 288 IPR013088 GO:0006355|GO:0008270
Vra1g1456 338 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1456 Vra-Chr1 22470632 22475626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1456 18 308 C2C2-Gata Transcription Factor Family AT4G32890 37.966 1.25e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra1g1456 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1456 - - gmx:100792644 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1456 1 22470632 22475626 Vra8g2001 8 37754622 37758319 PCT