Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1440 ATGGGCAGGTATTACCACCTTTCTTCATCTTTCCTTAGTGTTCTTTACTTCCTCTTTTCTTTCTCTCCCATGGTCTTCTCTCTGCTATCACAAACCCAAACACAAACTATGAACAGTCTCTCAAAGAATCTTACTGGTAGGATTCCATGGACTGGCTCTGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCGTGCCAACTCCTCTGTAGTAGGGATTTCTTTATCTGGCTTTTCACTCAATTCTTCTGACTTTCTGCCCCTTGTTTGCAAAATTGAAACTTTAGAGCTTCTTGATGTCTCCAATAACTATCTGAGCTCAATCCATGATGGTTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAGCTGTTGAATTTTAGTAATAACAATTTAGGTATTTTACCTACTTTTCATGGCTTTGATGCATTGGAATCCCTGGATATGTCTTTCAATGCAATGAGAGGGAATATTGTTTTAGAGATAGATGAGTTGGTTAGCCTCAAAATTTTGAATCTTACTTTCAATGGATTCTCTGGGTCTCTTCCTACCAAATTGGGAAAGTCCATGGTTTTGGAGCACCTTCTGCTTTCTAACAATAGTTTTGAAGGCAAAATCCCTGATGAATTATTCAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATATACTTTCACACTCTATTCCTACCAATATTGGGAAGCTTTCTAAATTAGAAACTTTGATCCTTTCCACTAATAACCTCACTGGTGAAATTCCAACTTCACTGGCGAACATCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAGCTTCACAGGTTCTATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGTTATAATGCTCTGTCTGGCGCCATTCCAGAAGACTTTTTATCTCCACAACAGTTGCAGGTTGTAGATTTGACCAATAATATGTTAAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGGAGCAATCAGCTGAGTGGAAACATTCCCTCAGATGCTTTTGTAGAAGTTCAGAATTTGACATACTTGGAGCTGGATAACAATATCTTCACGGGATCAATACCACCTAAGTTGGGTTCTTGCAGGAATTTGACATTGTTGAATTTAGCTCAGAATCGGTTGAGTGGTATATTGCCACAAGAGATTGCCAATCTTACCAATCTCCATGTCTTGCAGCTCCAATTGAACAATCTTAGTGGTTCAATCCCAACTCAAATCGGCCAACTTCATGAGTTGTTAACCCTGAATTTGAGCCGGAATTCTCTGACTGGAACAATTCCATCTGAGATTACAAGTTTAAGTCGTCTTAATTTCCTGTACTTGCAAGGGAACTATCTTAGTGGTTCCATACCGGCATCTATTGGCAAGTTTAATCATCTTTTAGAACTCCAACTTGGGGAAAACCACTTGAGCGGTGTGATTCCAAGTATGCCATTGAGTCTGCAGGTTACATTGAATCTTAGTAGCAACCACTTTAACGGTTCTATTCCTAGCAGTTTTGGGATTTTGAGTAGCCTAGAAATCTTGGATCTCTCAAATAACAACTTTTCTGGTACAATTCCTCATGATCTTACTAACATGCCGGCTTTGACACGGTTGATACTTTCTAACAATCCTCTGTCTGGAGAAATCCCAAAATTCAATCACTATGTTAATGTTGAACATAATGGAACTAACCTAAAAGATAATACTGCAGAGGACAACACCACTACCAAGACAGCAGGGTCCAAGAATGTAATAAGCGTTGGAGTGGCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCTTTGTCACTCTGTTGGTTTTGTCAGTGTCACGCCACTATTACAGGGTCAATGATGAGCATTCACAGTCAACAGAAGTTCGTCAGCATCCTCAGGTCATGCAAAGTAGTCTGTTAACTCCTAATGGAATACATAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTGCCGAAACATCAAATGTTACTCTTAAAACAAGGTTTTCAACTTATTATAAGGCTGTTATGCCGTCTGGTTCAATCTATTATGTCAAGAAACTGAACTGGTTTGACAAGGTATTCCAAGTAGGAAGTCATGATAAGTTTGTTAAAGAGCTAGAAGTATTGGCCAAATTGAACAATTCGAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGACACTGCTTATATACTATACGAGTTTATCTCAAATGGCTCCCTCTTTGATGTTCTTCATGGAAGCATGGATTTGACATTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTTTCTTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAAAGTACAGGGAACTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTGATTCTGCTTGAACTCCTGACAGGAAAGCCTGCAGTGACTGAGGGAACGGAATTGGTGAAGTGGGTTATGCGTAACTCCACAAACCAAGATTACATTCTTGACTTTAATGTCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTGGAACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTGCTAAGGATGCTCTTAAATGCTAGATGA 2841 0.3981 MGRYYHLSSSFLSVLYFLFSFSPMVFSLLSQTQTQTMNSLSKNLTGRIPWTGSDPCAWKGVSCDRANSSVVGISLSGFSLNSSDFLPLVCKIETLELLDVSNNYLSSIHDGFITECGKIKGLKLLNFSNNNLGILPTFHGFDALESLDMSFNAMRGNIVLEIDELVSLKILNLTFNGFSGSLPTKLGKSMVLEHLLLSNNSFEGKIPDELFSYENLTWIDLKNNILSHSIPTNIGKLSKLETLILSTNNLTGEIPTSLANITKLSRFAANQNSFTGSIPSGITKYLTSLDLSYNALSGAIPEDFLSPQQLQVVDLTNNMLNGSLPTKVSPNLFRLRFGSNQLSGNIPSDAFVEVQNLTYLELDNNIFTGSIPPKLGSCRNLTLLNLAQNRLSGILPQEIANLTNLHVLQLQLNNLSGSIPTQIGQLHELLTLNLSRNSLTGTIPSEITSLSRLNFLYLQGNYLSGSIPASIGKFNHLLELQLGENHLSGVIPSMPLSLQVTLNLSSNHFNGSIPSSFGILSSLEILDLSNNNFSGTIPHDLTNMPALTRLILSNNPLSGEIPKFNHYVNVEHNGTNLKDNTAEDNTTTKTAGSKNVISVGVAILIAIVAAIFLVGFVTLLVLSVSRHYYRVNDEHSQSTEVRQHPQVMQSSLLTPNGIHRSNIDFSKAMEAVAETSNVTLKTRFSTYYKAVMPSGSIYYVKKLNWFDKVFQVGSHDKFVKELEVLAKLNNSNVMTPLAYVLSTDTAYILYEFISNGSLFDVLHGSMDLTLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVMRNSTNQDYILDFNVSRTSQAVRNQMLAILEIARVCVGTSPESRPKMKSVLRMLLNAR* 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1440 946 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Vra1g1440 946 Pfam Leucine rich repeat 403 463 IPR001611 GO:0005515
Vra1g1440 946 Pfam Leucine rich repeat 501 557 IPR001611 GO:0005515
Vra1g1440 946 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 943 - -
Vra1g1440 946 Gene3D Ribonuclease Inhibitor 284 497 IPR032675 -
Vra1g1440 946 SMART LRR_typ_2 92 115 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 119 140 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 165 189 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 450 474 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 402 426 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 379 401 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 354 378 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 520 544 IPR003591 -
Vra1g1440 946 SMART LRR_typ_2 237 260 IPR003591 -
Vra1g1440 946 SUPERFAMILY Protein kinase-like (PK-like) 684 942 IPR011009 -
Vra1g1440 946 PANTHER F12K21.25 13 943 - -
Vra1g1440 946 Gene3D Ribonuclease Inhibitor 498 590 IPR032675 -
Vra1g1440 946 Gene3D Transferase(Phosphotransferase) domain 1 753 946 - -
Vra1g1440 946 SUPERFAMILY RNI-like 253 563 - -
Vra1g1440 946 PRINTS Leucine-rich repeat signature 286 299 - -
Vra1g1440 946 PRINTS Leucine-rich repeat signature 520 533 - -
Vra1g1440 946 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Vra1g1440 946 Gene3D Ribonuclease Inhibitor 27 186 IPR032675 -
Vra1g1440 946 Gene3D Phosphorylase Kinase; domain 1 634 752 - -
Vra1g1440 946 SUPERFAMILY L domain-like 48 325 - -
Vra1g1440 946 ProSiteProfiles Protein kinase domain profile. 673 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1440 946 Pfam Protein kinase domain 684 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1440 Vra-Chr1 22006371 22010697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1440 144 946 Receptor kinase-like Gene Family AT2G41820 38.462 1.01e-156 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra1g1440 Pkinase 2.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1440 - - gmx:100796647 1355.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1440 1 22006371 22010697 Vra1g1440 1 22006371 22010697 ECH