Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1432 ATGGAAGGTTCAGAGGAAGAAGAGCTTCTAAATCTTACTCTTTCGGTTGATGCAGGTGGAGAGAGGAGAAAGAAAGGAAGGGCAAGGGATGATGATACGAATTCTCTTGTTTTTCCTATGAAGTCCAGTGAAGGGTATGAAGGGAAGATCTTTAGGCTGCTACAAATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGATGGGAATAATGGTCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCTATTGATGAGAGAAACTACTGTGCAACTCTTGAGAATCTGATTGAGTTGTATCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTAGCCTACTTTGCTGACGGTTTGGCTGCAAGGCTTCTCACAAGAAAGTCCCCTTTCTATGACATGGTCATGGAGGAACCGACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCCATTTTGGAGGCCTACGAGGAGGAGGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCTGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTTGGGAACAACCTGAAAGAATTGCAAGAAACTGAGGCCAGATTAGTTAGCTTCTCAAAAGGGTTTAGTAACCAACTAGTGTTTGAGTTCCAAGGGCTTCTAAGAAGCTCATCAAGGCTCGTCAACCTGAGGAGAAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTAAACACTTTGAGTAGTTTCATGAATGTCTCGGACACATTAGGCCTTGTTCATTCTCTTGGCCCCTCCATTGTTGTATTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCTTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTGCCCAAAGTACGAGAGGATGGAAACATGGAAAACAAGAATGGAGAATCATGGGTTTGTGGGAAGAAAAATTAGCTCAAAGTGTGTGATCCAGGCGAAGCTGCTTCTGAAGATGAGGACCCATTATTATCCTCTACAGTTTGAGGAAGAGGGTGGAAGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAACAGTTATCTCTTTGGGATGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA 1392 0.4303 MEGSEEEELLNLTLSVDAGGERRKKGRARDDDTNSLVFPMKSSEGYEGKIFRLLQMRELMLREDHRRKGVVEDGNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFSNQLVFEFQGLLRSSSRLVNLRRKKNETLAVNLVSYLNTLSSFMNVSDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGSGGFRVSERDEGTVISLGWQNRFLLTVSAWQPI* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1432 463 PANTHER OSJNBA0084A10.13 PROTEIN 8 461 - -
Vra1g1432 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
Vra1g1432 463 Pfam GRAS domain family 80 461 IPR005202 -
Vra1g1432 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1432 Vra-Chr1 21830673 21832572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1432 66 461 GRAS Transcription Factor Family AT1G14920 33.007 1.16e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra1g1432 GRAS 2.6e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1432 - - gmx:100798251 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1432 1 21830673 21832572 Vra8g2040 8 38244965 38248641 PCT