Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1431 ATGGATGGTGAAAGCGTTGACGATTTTAATACNGGAGATGAGGGTTTTTCAGACATCGTTCCTAGTGTGAACATGTGTTTTGACAGTATGGAGGATGCCAAGAAATTTTATTGTGATTATGGAAAAAGATGTGGTTTTGGTGTTCGAACAAGAACTTCAAAGAAGAACAACAAAAACGAAGTTTATTACTTGAGATTAGTTTGTTCAAGGGAAGGTAGATATGTTTCTAACATTCGTCCTGAAGTCAAAACTCTACCTAGTCAAACAAATCAATGTCCTGCAGGAATCACATTTGCTAGAAAAGATGAGAAATGGGTTGTTAGGACTATTGTTGTAGAGCACAGTCATGAGCTTTGTCCACAAACCTCCAATCTAATTCGTGGCAATAGAAAATTGAACATGCACGCCAAACACACGTTGGAAGTTAACGATGACGCGGGTGTACGTATAAACAAGAGTTTTCTTAGCATGGTGAGTGACGCTGGTGGATATGAAAATATGGAATTTATGGAGAAAGATGCTAGAAACTTCATCGGTCAACATAGAAGGTCAGTTTGTAAGGACGGAGATGGTCAGACGCTACTACGTCACTTTTCAAAAATGAGAGACCTGAATAACGATTTCTTCTACGAACTAGAAATGGATGAAGGAAATAGAATTACTAGTGTATTTTGGGCGGATGCTAAAAGCCGAGCTGCTTGTGAAGAATTTGGTGATGTGGTTTCTTTCGATACGACTTATCTAACAAACAAATATGACATGCCATTTGCTCCATTTGTGGGAGTAAACCATCATGGACAATCCATCCTACTTGGTTGGGGATTACTTTCATCAGAGGACACTACCTCATTTGTCTGGTTATTCCAGACTTGGTTAAGATGTATGGCCAACAAGGCACCAGACAGTATAGTCACAGACCAGTGTAGAGCAATGGCTAATGCAATTAAAGAAGAACCCAAAATGCAGAGATACCAAACGTTGTGTAAGCGGTTCTATGACATAGCTGAGGCTGTTTGTGAATCTCAATCAGCATCTAATGAATTGGAAAAAGAATTGAATTCTCTTCGTAAAAAGTTTGGAGTCAATACACAATTACAAAATAACATAGTAAGTGAGGAAGGACAACTGAGGTATGAAAATCCACTCAACGGTACTCCATCGAACACCGCATGTGGAAGTAGTGATGTACTTGTTCGCAGTCCAAAAACGGTGAAGCGTAAAGGCCGACCAAGAACTAACAGATTGAAGTCATGTGTAGAAACACTAAGCAGAAAAAGGAAAACCACTTCAAGGAAGCATGCCTCAACAACAACGCATGAACAAAATGAAACAACTACGTCTAATCTGACACAATCCGAAGAGGTACTGCGTTATTCAAACGAAACGCAACAAGTTTCACCACTATCTGAAATGCCTCCACTTGGCTTCATGTCATTGTTATCAGCTGTTCATAATAATTTTGATAACCCACTTTGA 1476 0.393 MDGESVDDFNTGDEGFSDIVPSVNMCFDSMEDAKKFYCDYGKRCGFGVRTRTSKKNNKNEVYYLRLVCSREGRYVSNIRPEVKTLPSQTNQCPAGITFARKDEKWVVRTIVVEHSHELCPQTSNLIRGNRKLNMHAKHTLEVNDDAGVRINKSFLSMVSDAGGYENMEFMEKDARNFIGQHRRSVCKDGDGQTLLRHFSKMRDLNNDFFYELEMDEGNRITSVFWADAKSRAACEEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGQSILLGWGLLSSEDTTSFVWLFQTWLRCMANKAPDSIVTDQCRAMANAIKEEPKMQRYQTLCKRFYDIAEAVCESQSASNELEKELNSLRKKFGVNTQLQNNIVSEEGQLRYENPLNGTPSNTACGSSDVLVRSPKTVKRKGRPRTNRLKSCVETLSRKRKTTSRKHASTTTHEQNETTTSNLTQSEEVLRYSNETQQVSPLSEMPPLGFMSLLSAVHNNFDNPL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1431 491 MobiDBLite consensus disorder prediction 422 451 - -
Vra1g1431 491 Pfam FAR1 DNA-binding domain 35 119 IPR004330 -
Vra1g1431 491 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 317 IPR031052 GO:0006355
Vra1g1431 491 Pfam MULE transposase domain 240 318 IPR018289 -
Vra1g1431 491 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 19 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1431 Vra-Chr1 21671800 21674329 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra1g1431 MULE 2.5e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1431 - - vra:106759276 1002.28