Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1426 ATGAACGAGTCTAAAAACACCATTCCTCTCCTATTCAGATGCCCCATAAGTTTAGACTTGTTGGAAGATCCTGTAACCTTGTGCACAGGCCAAACCTATGACAGGTCAAACATAGAAAAATGGCTTGCTGCTGGTAACCTCACTTGTCCGGTCACAATGCAAAAGCTTCACGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCACTGGCTTCAACTGGGTCCCTTATTCGACCCTGCCAACCCTGAAACTTCAACTATTGAATCCTTAGCTTATCTCAAGCGTACCCTTGAATCCCATGAAAGCAGCTTAGAAACCAAGCTCCAAGCACTCACCAAAATCAGTCTCTTATCTGATGAGTATTGCTCCTTTAACAAATCATGCTTCCTCCAATTGAACTTCTTACCACTGCTTCTTGAACTAGTTTTTGGAACTCGAGTATCAATAGATCACATGAACTTCATAGAGCTGGCACTTTGTTGCATTCAGAAATTGCTGCCACTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGGGTCTAAATTAGCCATGTTTGTGCTACTAATTGAAAAGGGTACTAACTCAGTAAAGACTAGTTTGTGCCGTGTTATAGAGTCAGCATCTTGGTCATCTGAGACAGAAGATTTGTGCTATATTCTTGGAAATTCTCCCAAACTAGTAGAGGAGATTGTTGAAGTTGTTAACCAAAATTATGAAGTTTCTGGGGATGCAATTAAAGCGATGTCAGCACTGTGTTCGTTGCAATCCAATAGAGAGAGTTTGGTAAGAGGAAGAGCAATAGAAGGTATCATGAGATACATCTCATCAGAAAGAAGAGAGCTGACCCCACTGGCAGTGAGAACAGTTGAGAAACTTATGGGGCTTGAAAGTGCTAAAGTTGCATTGGTTAACCACCCTAATGGTGTTCGGACATTGGTTGATATGGTTTTCAAGGTATCTGATCAAGAATGCAGTGAGAGTGCTGTTGAGGTGCTTTTAGTTGTTTGTGGTGAATTTGAGCGTGCAAGAGAGACAGCCATTGAAAGTGGAGTTTTGACTAGGTTGTTGTTGCTCATGCAGAGTCAGAGTAGTAACACAACAAAATCAAAGGCAAGAATGCTACTCAAATTGCTAAGATCAGAGCCAAAGAACAATTAG 1173 0.4152 MNESKNTIPLLFRCPISLDLLEDPVTLCTGQTYDRSNIEKWLAAGNLTCPVTMQKLHDPSIVPNHTLRHLIDHWLQLGPLFDPANPETSTIESLAYLKRTLESHESSLETKLQALTKISLLSDEYCSFNKSCFLQLNFLPLLLELVFGTRVSIDHMNFIELALCCIQKLLPLGSLEPLNMIKDGSKLAMFVLLIEKGTNSVKTSLCRVIESASWSSETEDLCYILGNSPKLVEEIVEVVNQNYEVSGDAIKAMSALCSLQSNRESLVRGRAIEGIMRYISSERRELTPLAVRTVEKLMGLESAKVALVNHPNGVRTLVDMVFKVSDQECSESAVEVLLVVCGEFERARETAIESGVLTRLLLLMQSQSSNTTKSKARMLLKLLRSEPKNN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1426 390 SUPERFAMILY ARM repeat 95 384 IPR016024 -
Vra1g1426 390 PANTHER WDSAM1 PROTEIN 7 385 IPR045185 GO:0061630
Vra1g1426 390 SUPERFAMILY RING/U-box 6 76 - -
Vra1g1426 390 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Vra1g1426 390 PANTHER OS02G0542800 PROTEIN 7 385 - -
Vra1g1426 390 CDD RING-Ubox_PUB 12 54 IPR045210 -
Vra1g1426 390 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Vra1g1426 390 Gene3D - 187 390 IPR011989 -
Vra1g1426 390 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Vra1g1426 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1426 Vra-Chr1 21640818 21642823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1426 8 384 U-box Gene Family AT1G49780 30.691 6.23e-40 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1426 - - gmx:100805322 620.157