Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1423 ATGCCGGCGTGGTGGAGTAGGAAGTGGAGCAAGAGCAAGGAGGAGCACGAGGAGGCCGACGAGGTCGAGGAGGAGGAAGTGGAAGAGACACGTGGCGGGTTTCAGTTGAGTTTCTTGAAATCTCCGGTGGCCGTTAGGAGGGGTGACGTCGGCAAGAGTAAAAGGAACAAGAAGAAGCCCAAGAGCTTCGACGACAAGCTGAAAGGGGTTCCCTTGCCTCGTCCCACTCACAGTCACAGCGATCAAATTCAAACGTTTGGATCTCTCTCGGTGTCGGGTTCCAGCGTCAGCTCATCCACCTCCTTCGAAGATCACCCAATTTCGCCTCACTTTAATGCCAACAGAGGACAAGATGAGGTGAGGTTCAATGTGAGGTCAAAAAGTCCTGGTCCTGGGTCAAGAGGACCTACTAGTCCTACCTCACCGCTTCATCCAAGGTTGCATGCTTTGAGTCTTGACTCTCCTACGGGGAGGCAAGACGAGGGAAGGAGTGAATGTCATCCGTTGCCACTTCCTCCTGGTTCTCCAACTAGTCCTTCTTCTGTGTTTTCCAGTTCCATCACACGGCCAAATGGACTGTTGGAAAATGCTACCAGCAATGTGTCCAAGTGGAGAAAAGGAAAGCTCCTAGGACGAGGAACATTTGGGCACGTGTATTTGGGATTCAATAGTGAAAATGGACAGATGTGTGCAATAAAAGAAGTCAAGGTTGTCTCTGATGATCAAACATCAAGAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTAAATCAGCTTTCGCACCCTAATATTGTTCAATACTATGGGAGCGAACTGGTAGAAGAATCACTTTCTGTATTTTTGGAATTTGTCTCTGGTGGTTCTATCCAGAAATTACTTCAGGAGTATGGTCCATTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGCAAGAAATACCGTACACAGGGATATCAAAGGGGCAAACATACTAGTTGATCCTAATGGGGAAATCAAATTGGCCGACTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATAGTCTTCCGGTTGATATATGGAGCTTGGGATGCACAATTATTGAAATGGCAACATCTAAACCTCCTTGGAATCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGCAAAGATATGCCTGAAATCCCTGAGCATCTCTCCAATGATGCAAAGAATTTCATCAAGTTATGCTTACAAAGAGACCCATCGGCTCGGCCGACGGCCCAAATGTTACTAGACCAGCACCCTTTCATTCAAGATCAATCAGCAACAAAAGCTGCAAATGTCAGCATAACCAGAGAAGCTTTCCCTTACATGCTAGATGGAAGCCGGACACCGCCTGTGTTAGAGTCCCATTCGAACCGAACAAGTATAACTTCGTTCGATGGAGATTATGCATCAAAGCCAGCTCTTGCAGCCCCACGTGCATCAAGAAGTCCAAGAGATAACACAAGAATGATCATATCTTTACCGGTATCTCCCTCTTCAAGTCCATTGCGACGGTATGGGCCAACGCACCAGAGCTGTTACTTTTCTCCTCCTCATCCAGCTTACACAACAATGGGACAAAGTAGTTACACTTTGAATGACGCATGCTCGTATCCCATAAGGTCAAATGCACCGTTGACTCTTGATCCTTGGCATGAAACATCTCGGTTCAAAGCCAATACACCACCTGGTGGATCTCCAAGAATGAGACTCATTTAA 1836 0.4602 MPAWWSRKWSKSKEEHEEADEVEEEEVEETRGGFQLSFLKSPVAVRRGDVGKSKRNKKKPKSFDDKLKGVPLPRPTHSHSDQIQTFGSLSVSGSSVSSSTSFEDHPISPHFNANRGQDEVRFNVRSKSPGPGSRGPTSPTSPLHPRLHALSLDSPTGRQDEGRSECHPLPLPPGSPTSPSSVFSSSITRPNGLLENATSNVSKWRKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVVSDDQTSRECLKQLNQEINLLNQLSHPNIVQYYGSELVEESLSVFLEFVSGGSIQKLLQEYGPFKEPVIQNYTRQIVSGLAYLHARNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTIIEMATSKPPWNQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLQRDPSARPTAQMLLDQHPFIQDQSATKAANVSITREAFPYMLDGSRTPPVLESHSNRTSITSFDGDYASKPALAAPRASRSPRDNTRMIISLPVSPSSSPLRRYGPTHQSCYFSPPHPAYTTMGQSSYTLNDACSYPIRSNAPLTLDPWHETSRFKANTPPGGSPRMRLI* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1423 611 SMART serkin_6 204 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1423 611 Gene3D Transferase(Phosphotransferase) domain 1 201 482 - -
Vra1g1423 611 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 592 - -
Vra1g1423 611 MobiDBLite consensus disorder prediction 58 72 - -
Vra1g1423 611 Pfam Protein kinase domain 205 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1423 611 PANTHER MAP KINASE KINASE KINASE 1 592 - -
Vra1g1423 611 MobiDBLite consensus disorder prediction 77 107 - -
Vra1g1423 611 ProSiteProfiles Protein kinase domain profile. 204 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1423 611 CDD STKc_MEKK1_plant 203 461 - -
Vra1g1423 611 MobiDBLite consensus disorder prediction 1 189 - -
Vra1g1423 611 SUPERFAMILY Protein kinase-like (PK-like) 202 555 IPR011009 -
Vra1g1423 611 ProSitePatterns Protein kinases ATP-binding region signature. 210 233 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1423 Vra-Chr1 21620025 21625819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1423 1 524 MAP Kinase Kinase Kinase AT1G53570 57.326 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra1g1423 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1423 K04421 - gmx:100787064 906.36