Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1422 ATGCTTCAAAGCTTGGTCCCGCGATCCCCCCACACTTCCAACCTTAACGACATGAAAACTAAGCTACCAGTTAACACCGTTGATTCTCTCGCCGATCAACCTTCTTTCAAGCGGACCAACTTCTCTGTCGATACTGCCATCGAGGAGGACCAGGCCTTCGATCCCCACCCTCACGCCGGCGATATCATGCAAGGTCTCCAATGGCCAGGATTGTTCCATATCCTTGCCTCTTGCTCGAAGAAGATCCGCTCCATGAGAATCATTGGATTTGAATCCTCCTCGGAGCTCCTCGACTTTACTGGCCGGAGACTCGCAGATTTCGCGAGCTCGTTTGGGCTGCCGTTTGAGTTTCACCCAGTGGAGGGGAAAATCGGAAGCGTGATCGAACTGAGTCAACTCGACGTTCGAGCCAGTGAGGCGATCGTGGTGCACTGGATGCATCATTGCTTGTATGACATAACCGGGAGCGATTTAGCTGACTTAGCTTAG 489 0.5235 MLQSLVPRSPHTSNLNDMKTKLPVNTVDSLADQPSFKRTNFSVDTAIEEDQAFDPHPHAGDIMQGLQWPGLFHILASCSKKIRSMRIIGFESSSELLDFTGRRLADFASSFGLPFEFHPVEGKIGSVIELSQLDVRASEAIVVHWMHHCLYDITGSDLADLA* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1422 162 ProSiteProfiles GRAS family profile. 1 162 IPR005202 -
Vra1g1422 162 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 160 IPR005202 -
Vra1g1422 162 PANTHER SCARECROW-LIKE PROTEIN 23 39 160 - -
Vra1g1422 162 Pfam GRAS domain family 61 149 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1422 Vra-Chr1 21611251 21612806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1422 34 161 GRAS Transcription Factor Family AT5G41920 59.091 1.02e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra1g1422 GRAS 1.9e-21 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1422 - - vra:111241298 330.102