Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1421 ATGGCGGGGAAACTGGGAAAGGCAGCTTATGATGCAAAGATGTTGAAGCTTCTGAGAGAGTACAGTCAGGTGCTGGTGGTTTCATCTGACAATGTGGGTTCAAATCAGCTTCAGGGCATACGGAGGGGACTCCATGCTGATTCAGTTGTGGTGATGGGAAAGAACTCCCTGATGAAACGCTCTATCATCTTGGATGCTCAGAAGACTGGCAACAAGGCCTTCCTTAACCTTGTCCCCCTTCTTGTGGGAAATGTGGCATTAATTTTCACCAAAGGTGACATAAGGGAGGTCAGCGAACAGATTGCCAAGTACAAGGTTGTTCAACCTATTCTAATGTGTCCCAAGTATATGTCACATGACACATACCAGAATTGTTCCTATATGCAATCCGGACAGTTACCTTTGGGCCTTACATGTTGTAATCAGCAGCAGTCTTCGCAGGTTTCTGAGCCTTTTCTTGTATGCTCAAAATTCCAGCCACACCAACATTGTTTCATGATGAGATCAAGGCAGTTCTTGATGACAAGTATATGGTCTCCTCTACTCCTTTTGGCTGGCAACTTGTGA 567 0.4533 MAGKLGKAAYDAKMLKLLREYSQVLVVSSDNVGSNQLQGIRRGLHADSVVVMGKNSLMKRSIILDAQKTGNKAFLNLVPLLVGNVALIFTKGDIREVSEQIAKYKVVQPILMCPKYMSHDTYQNCSYMQSGQLPLGLTCCNQQQSSQVSEPFLVCSKFQPHQHCFMMRSRQFLMTSIWSPLLLLAGNL* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1421 188 PANTHER RIBOSOMAL PROTEIN L10P-RELATED 1 187 - -
Vra1g1421 188 Pfam Ribosomal protein L10 6 104 IPR001790 -
Vra1g1421 188 Gene3D - 4 136 IPR043141 -
Vra1g1421 188 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 187 - -
Vra1g1421 188 SUPERFAMILY Ribosomal protein L10-like 7 105 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1421 Vra-Chr1 21608593 21609919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1421 7 109 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 66.990 2.81e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1421 K02941 - mnt:21409050 157.532