Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1417 ATGGCTGTATCGAGATTGAAACCGGGGTTTCGGTTCCACCCCTCGGGTGTCGAGTTGGTTCTGTACTTTCTGAAAAGGAAAGTGATGGGGAAAAAGTTCTTTGGTGGTGCCATTGCTGAACTTGACATATACAAATATGCTCCATGGGATCTCCCAGCTAAGTCTTGTCTGAGAACTGGGGAATTGGAATGGTACTTCTTCTGCCCACTGGAGAAGAAATATGGCAGTGGGTGTAGGATGAAGCGCGCTACTGAAATTGGGTACTGGAAAGCTACTGGGAGGGATAGACCTGTTCAGTACAATAATAAAACGGTGGGGAAGATTAGAACACTGATATTTCACAAGGGTAAATCGCCTAAAGGTGAAAGAACTAATTGGGTTATGCATGAGCATAGGCTTGAAGATAAGGACCTTGCTGACAAAGGAATTGCACAGAATTCCTATGTAGTCTGCAAGGTATTTGAAAAGGAAGGTCTTGGTCCCAGGAATGGGGCGCAATATGCAAGGCCATTTAATGAGGAAGAGTGGAGCGATGAAGAACTGGAAATACCTTGTACTGCTTCAACTGCACCAGTTCCCATCTTGCCTATGACATCCGATGCTTCTGTCCCAAAGGACAATCCCGTCCCTGCTAGTGGATGTACATCATGTCTATCAAGATCAATGCCTTTACCTGGCACCGTGGATCCTTCTGATCCAAATGATCAAGTTGTTAACAATGATGATGAAGATATTTTACGGATGAATGATATTTCTCAAGATGGTGACAAATTGTTTGAGTCAATGACATGCGGCGGAGGCACGACGGTGGTGCACGATGGCGCAAGGGTGCGTTTCTTCTTCTTCGTTCTGTTTTGA 858 0.451 MAVSRLKPGFRFHPSGVELVLYFLKRKVMGKKFFGGAIAELDIYKYAPWDLPAKSCLRTGELEWYFFCPLEKKYGSGCRMKRATEIGYWKATGRDRPVQYNNKTVGKIRTLIFHKGKSPKGERTNWVMHEHRLEDKDLADKGIAQNSYVVCKVFEKEGLGPRNGAQYARPFNEEEWSDEELEIPCTASTAPVPILPMTSDASVPKDNPVPASGCTSCLSRSMPLPGTVDPSDPNDQVVNNDDEDILRMNDISQDGDKLFESMTCGGGTTVVHDGARVRFFFFVLF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1417 285 Gene3D NAC domain 16 158 IPR036093 GO:0003677|GO:0006355
Vra1g1417 285 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Vra1g1417 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 229 - -
Vra1g1417 285 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Vra1g1417 285 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Vra1g1417 285 PANTHER PLANT NAC DOMAIN PROTEIN 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1417 Vra-Chr1 21568442 21578916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1417 1 258 NAC Transcription Factor Family AT5G64060 51.894 2.79e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g1417 NAM 6.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1417 - - vra:106770001 548.51