Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1409 ATGGACACCAACCAGAACACCACCACAAGTGCATTCACAAATGTGAACACCACTTGGAATCTTGAAAAGATGGAAACAAACGAACAACAACATCAACATCAACATCATCATGACCATATTATTCTCCAAGTCCAAGACCCTCTTGCTTCTGGGATTTGGTCCAACAACTACCCCCACAGTCACAACCCCAACCTTCTTCAAATGCATCAAACACCCCCCACGACAACCTCGTCTGTTGTAGCCCCACCCTCCTCCTCGGGGTTCCTTGGAGACATACTGGGTGTTCACAGCATGGAAGAAGACGAGGAGCCGGAAGAAGAGCTGGGAGCCATGAAGGAGATGATGTACAAGATAGCTGCTATGCAACCGGTGGACATCGACCCCGCCACCATCCGTAAACCAAAGAGAAGAAACGTTCGCATCAGCGACGACCCTCAGAGCGTGGCTGCACGCCACAGGAGAGAGAGGATCAGCGAGAAAATCCGCATCCTCCAAAGACTCGTTCCCGGGGGAACCAAAATGGACACTGCTTCAATGCTTGACGAAGCCATTCGCTATGTTAAGTTCCTCAAGAGACAAATCAGGTTGCTTCAATCCATTCCTCACCCTTCCCAACCACCACAATGCATTGGTTTTGCCACCACAAACGCTAGCACCTTGCTATTAGCCCCTTCCTGTGATTGGTCTTTTGCACCAAACGTGTTACTCAGCTCCACCGCCGTAACCGCAGCCACGGCCTCTTCCTCCTCGATGGACATGCCGGCGGGACTCGGATTCGACGGCCATGGCCACGCTTGTGACGGTTCCACCAGCTTTAACCAGCACGAGGTAATCAGTGAATAA 843 0.5148 MDTNQNTTTSAFTNVNTTWNLEKMETNEQQHQHQHHHDHIILQVQDPLASGIWSNNYPHSHNPNLLQMHQTPPTTTSSVVAPPSSSGFLGDILGVHSMEEDEEPEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSIPHPSQPPQCIGFATTNASTLLLAPSCDWSFAPNVLLSSTAVTAATASSSSMDMPAGLGFDGHGHACDGSTSFNQHEVISE* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1409 280 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 256 - -
Vra1g1409 280 SMART finulus 147 196 IPR011598 GO:0046983
Vra1g1409 280 Gene3D - 144 202 IPR036638 GO:0046983
Vra1g1409 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Vra1g1409 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 200 IPR036638 GO:0046983
Vra1g1409 280 CDD bHLH_AtIND_like 142 199 - -
Vra1g1409 280 Pfam Helix-loop-helix DNA-binding domain 151 190 IPR011598 GO:0046983
Vra1g1409 280 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 256 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1409 Vra-Chr1 21495456 21497388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1409 110 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.775 2.54e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra1g1409 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1409 - - aprc:113856609 417.542