Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1407 ATGAGCGGAAACGGCAGAAACACCTCTTCAAAGTTGGATTCAGGAGATGGACCTGAATTTGCATCTTATGGTACTACTAGTAGCAACAATTCAAACTCTTCCTATTTGGAGAGAAACGATAACTTAAATCCAAGAATGGGATTTTCAAACGAGGAATCTTTTTCTGGAGGCAGGTGTTCAAATAAGGATGACATTGTTGTGAGTAAAGATGACAGAGTTTCGGATACGCAAAACACTGATGGAAGTAACAAAATGGAATTGTCTCCTGTAAATGAAAATTTAGAAAATAAGTACAGTCAATCCCCAAAAACTGGTTGCAGTAGGTCAGACAGTAGAAGTAGCAGCCCAAGCCGGAGCAGGAGCAGGAGCAGGAGCCCTCGTAATTTTAGGTGGGATTCAAGAACCAATGATAGACGTGGAATGAGGGCAGCATGTAGATATTTTGCTGATGGGAAATGCAGAAGAGGAAGTAAATGTCACTTCCTTCACGGTGACAATCAAAATGGATCTCTCTTATATTCTAGTCCAAGTGGAAGATCTAAAGGAACTTGCATGAACTGTGAAAATGAAAGGTGTAGAATGGGAGAATCATGCAAGTATATGCATCATGAAAATTCTAGCAAGTTCAATAAAGCTTCTATCGACGAATCAACTGGGGAAATGGAAATTGATAGAGAGTGCAGAGGGGGCTCTTTCGAGAAAGGTGGTCCACATGGTAGAAACCAGAGAAGTGACATTCCTTGCAAATTTTATGCATTTGGGAATTGTCGATATGGTAAAGATTGTAGATTTTCTCATGATAGGCAAGCATGTGGGAGCCCAAGTAGAGGCTTCAAGAATGATTTGTTAAGGAGCAGTGGTGGAGATCAGGCTTTGGATAGGCCAAAATCAAGTGATGGACAGGATTTAGATGGTAGTGTGGCTGGTGCAGATAACAAAAAAGGAATTATGGTTGACCCAGAACCTGGATTTAATACTTTGCCGGTTGATGATGAACGGGGCCATAGCTTAGACAAGAACACAGTGCATGGTGAATCAGCATTTTCAAGTGATGTGAAGGAGGCCAAAAATGATAGTTCCAATGTTCACACTTGTCAGTCAGTAGGCGCAGACATTTGGCCTGGTAATGAAGAAATGTCTCATAATTGGAATTATGGTGTGACATCTCCCATCCCTATTAAAGAAGAGCATGAGCAGAGTAAGCAACAAGTTTCTCCAGGTAATCACGTGCTTGATGTTCCACTCATTATGCATCCTTGTCTATAA 1266 0.4115 MSGNGRNTSSKLDSGDGPEFASYGTTSSNNSNSSYLERNDNLNPRMGFSNEESFSGGRCSNKDDIVVSKDDRVSDTQNTDGSNKMELSPVNENLENKYSQSPKTGCSRSDSRSSSPSRSRSRSRSPRNFRWDSRTNDRRGMRAACRYFADGKCRRGSKCHFLHGDNQNGSLLYSSPSGRSKGTCMNCENERCRMGESCKYMHHENSSKFNKASIDESTGEMEIDRECRGGSFEKGGPHGRNQRSDIPCKFYAFGNCRYGKDCRFSHDRQACGSPSRGFKNDLLRSSGGDQALDRPKSSDGQDLDGSVAGADNKKGIMVDPEPGFNTLPVDDERGHSLDKNTVHGESAFSSDVKEAKNDSSNVHTCQSVGADIWPGNEEMSHNWNYGVTSPIPIKEEHEQSKQQVSPGNHVLDVPLIMHPCL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1407 421 MobiDBLite consensus disorder prediction 326 340 - -
Vra1g1407 421 MobiDBLite consensus disorder prediction 78 122 - -
Vra1g1407 421 Gene3D - 139 208 - -
Vra1g1407 421 SMART c3hfinal6 242 268 IPR000571 GO:0046872
Vra1g1407 421 SMART c3hfinal6 179 204 IPR000571 GO:0046872
Vra1g1407 421 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Vra1g1407 421 Pfam CCCH-type zinc finger 247 267 IPR041367 -
Vra1g1407 421 SUPERFAMILY CCCH zinc finger 243 267 IPR036855 GO:0046872
Vra1g1407 421 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Vra1g1407 421 MobiDBLite consensus disorder prediction 270 342 - -
Vra1g1407 421 MobiDBLite consensus disorder prediction 1 56 - -
Vra1g1407 421 Gene3D - 238 296 - -
Vra1g1407 421 SUPERFAMILY CCCH zinc finger 142 164 IPR036855 GO:0046872
Vra1g1407 421 ProSiteProfiles Zinc finger C3H1-type profile. 139 166 IPR000571 GO:0046872
Vra1g1407 421 Pfam RNA-binding, Nab2-type zinc finger 191 202 - -
Vra1g1407 421 ProSiteProfiles Zinc finger C3H1-type profile. 242 269 IPR000571 GO:0046872
Vra1g1407 421 MobiDBLite consensus disorder prediction 63 77 - -
Vra1g1407 421 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 406 - -
Vra1g1407 421 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 406 - -
Vra1g1407 421 MobiDBLite consensus disorder prediction 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1407 Vra-Chr1 21477739 21480188 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra1g1407 zf-CCCH 1.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1407 - K22909 vra:106759211 852.047