Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1406 ATGGATCATCTCTTCATCTTCTCTCTCTTCCTGCTCCTAACCCTCTCCGCCGCGCACCGAAAATCCCCGCCTGTCGCCGCCGTCAAATCTGTCACGCCGGAGATCCAACGAGCCTGCGCCGCCACGCGCTTCCCGCAGCAATGCGAAACCTCTCTCTCCCAAGACCCTAAACTCCCGCCCAACCCGACCTCTCTCCAGTTAATCCAGTCCGCCATCACCATCTACTCTGAAAACCTCGCCACCGCGCAGTCCATGGTGAAATCCCTCCTCGATGGTGCTGCCGGCAGCCGCAACCTCACCGTCGCCGCCTCCACCTGCTTGGAAGTGTTGGACAACTCGAAGCACCGCTCTTCCCTCGCCAGCGACGCTCTGCCACTCGGAAAAACCAAGGACGCGCGCGCGTGGCTGGGCGCGGCGCTCTCGTACCAGTACGACTGCTGGAACAGCCTCAAATATGCCAACGTGTCCTCGGCCGTCGGCAAAGCGATGGCCTTCATCGACTCCCTCGAATCTCTCTCCAGCAACGCCCTCGGCATGGCCTTCTCCCTCGACGCCTTCGGAAACGACACCGCTTCGTGGAAGCCTCCCGCCACCGAGCGCAACGGCTTCTGGGGCAGCCTCGCCTCCGGCGACTCCGGCGCCGTGGGAGGTGTTCCGCCCAATTTGAAACCCGATGTTACGGTTTGTAAAGACGGAGCTGGCGGCTGTTATAAGACCATACAAGAGGCCGTCAACGCTGCGCCAGATAACGGCGACGGGAAGAAGTGGTTTGTCATTCTCATAAAAGAAGGAGTTTACAAGGAGACCGTTAGGGTTCCGCTGGCGAAGAGGAATGTGGTGTTCTTGGGTGACGGCATTGGCAAAACGGTTATAACCGGTGATGCTAACGTGGGGCAACCAGCCATGACAACTTACAACTCTGCCACCGTCGCGGTTCTTGGGGATGGATTCATGGCAAAGGATCTGACGATTGAGAACACGGCGGGTCCTGACGCACACCAAGCAGTGGCATTCAGATCAGACAGTGATCTTTCTGTGATTGAGAATTGCGAATTCTTGGGCAACCAAGACACTCTCTATGCTCACTCCCTGCGCCAATTCTACAAGTCATGCCGCATTCAGGGCAACGTCGACTTCATCTTTGGAAACGCTGCTGCAGTTTTCCAAGACTGTCTCATCCTGGTTCGTCCCAGGCAAGTGCGTCCAGAGAAGGGCGAGAACAATGCTATCACTGCACATGGCAGAACAGACCCAGCACAACCCACAGGCTTTGTTTTCCAGAACTGTCTCCTTAATGGCACTGAGGAGTACATGGCTTTGTATCACAACAACCCTAAGGTGCACAAGAACTATTTGGGTAGGCCTTGGAAGGAGTATTCCAGAACTGTTTTCGTTAATTCAGAGCTGGAGGTGATTGTGACAGCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCCCTCAAGACACTTTACTATGGGGAATTTGGGAACAAGGGACCTGGTTCTGATCTGTCTCAGAGGGTATCATGGAGTAGTAAGATCCCTCAAGACCACCTCCTGGCCTACTCAGTACAGAACTTCATTCAAGGAAATGATTGGATTCCATCATCGTCCTCCTAA 1620 0.5512 MDHLFIFSLFLLLTLSAAHRKSPPVAAVKSVTPEIQRACAATRFPQQCETSLSQDPKLPPNPTSLQLIQSAITIYSENLATAQSMVKSLLDGAAGSRNLTVAASTCLEVLDNSKHRSSLASDALPLGKTKDARAWLGAALSYQYDCWNSLKYANVSSAVGKAMAFIDSLESLSSNALGMAFSLDAFGNDTASWKPPATERNGFWGSLASGDSGAVGGVPPNLKPDVTVCKDGAGGCYKTIQEAVNAAPDNGDGKKWFVILIKEGVYKETVRVPLAKRNVVFLGDGIGKTVITGDANVGQPAMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNAAAVFQDCLILVRPRQVRPEKGENNAITAHGRTDPAQPTGFVFQNCLLNGTEEYMALYHNNPKVHKNYLGRPWKEYSRTVFVNSELEVIVTAQGWMPWSGDFALKTLYYGEFGNKGPGSDLSQRVSWSSKIPQDHLLAYSVQNFIQGNDWIPSSSS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1406 539 CDD PMEI-like_3 38 179 - -
Vra1g1406 539 PANTHER PECTINESTERASE 19 538 - -
Vra1g1406 539 SUPERFAMILY Pectin lyase-like 223 536 IPR011050 -
Vra1g1406 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 183 IPR035513 -
Vra1g1406 539 Pfam Pectinesterase 225 531 IPR000070 GO:0030599|GO:0042545
Vra1g1406 539 SMART PMEI_2 30 179 IPR006501 GO:0004857
Vra1g1406 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 179 IPR035513 -
Vra1g1406 539 PANTHER PECTINESTERASE 19 538 - -
Vra1g1406 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 178 IPR006501 GO:0004857
Vra1g1406 539 Pfam Plant invertase/pectin methylesterase inhibitor 35 179 IPR006501 GO:0004857
Vra1g1406 539 Gene3D - 220 539 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1406 Vra-Chr1 21461146 21464116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1406 24 533 Carbohydrate Esterase AT5G09760 63.301 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1406 - - gmx:100819675 878.241