Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1399 ATGAAGCCGACCGATGGAACCGTGGGTGGGACCCAGCCCCTCACCACCAAAGTAATTTCAATTATAACTCCTTCCTCTGTGGTCCCCTCTTTCCCACCCCTACCTTCTCCTCCTCATCATACGCAATTATTTCCCACCCTCCGCACGTGTCAACGCTTTTCCCATCCTACCCCTCCCAAACCAACATCTCACGTCACTCTACCTTTGACTCTCTCTCTTTTCTTTAAACACCACTTTCTTGTCCGCTCCATCGCCCACCTCTCTCTTTCTCTTTCTCTTTCTCTGTCTTCTCACCACACTTCGCTTCTTCCATTTTTATTTTATTTTATTATCACTTTTTTCTCTCACTCCCTCACCACCATGGTTAGAGACGATCTCTACATCACCGTTCCCAGCTTCTTCCGCTGCCCCATATCCCTCGACGTCATGAAATCCCCTGTCAGTCTTTCCACCGGCGTTACCTACGACCGCTCCAGCATCCAGCGCTGGCTCGACAACGGCAACAACACCTGTCCCGCCACCATGCAGGTTCTCCAAACCAAGGAATTTGTTCCTAATCGAACCTTACAGAGGCTCATCCAGATCTGGTCAGACTCCCTCCACCATCCACTCCACTCCGCTCACTCCCCCACATCCACCCACTCCCAATCCCTCCCCTCCAAGGACCAAATCCTTCTCGCTATCTCCGACTTGCAGACTCGCGCCGACAACCGCTTCGACTCGCTCGCCAAAATCGCTCGCTTCGCTCAAGATTCTGAAGAGAACCGCGATTTTCTCCTCAAAACGGAATGCTTCGTGCCTCTGCTCGTTGGCTTCCTCCACAATGTCAATGGCGCCGTCGAGTTCCTCGAACAGGTCGTTATGGCGTTGGATTTGGTTATCGGAAAAATGGAAGACCGTGAGGAGCTGAAAAACTTGATACTGAAGGCGCCGGGCGAGGCAGAAAAACAGAGCCTGGATTCTCTGCTCGTCGCTCTCCGACAAGGGAACCATGCCGCACAAATAGCATCGGTTAGGGTTTTGACATCGGTCGCCTTGGACGTGGAATCGAAGCTTTTGATAGCGGAGAAGGAAGGTTTAGTGTCCGAATTGCTGAAACTAATCACGCCGGAGAAAGATCCAGATCTAATCGAGAACTGTTTGTTGTGCCTGGTGGCTATTTCGTCTCCGAGAAGGAGCAAGATGAAGCTGGTGTGTCTGGGAGCGGTTAAGGTGTTGTCGAAGCTTCTCTGCGCTTCGAACATGAGCGTCTCGGTGACGGAGAAGGTTCTGAAGCTGGTGGAAACGGTGTCGTCTACGAAGGAAGGAAGGTTGGAGATATGCGAGGATTCAGCGTGCGTGGCGGCGATAGTGAACAAAGTGCTGAAAGTGTCGAGCGTGGCAACGGAACACGCCGTTACGACGCTGTGGAGCGTGTGTTATCTGTTTCGGGATGAGACGGCGCAAGAGGCCGTTACGAAGGCTAACGGCTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGCTCGCCGCAAGTGCGCCAAATGTCTGCGGATTTGCTCAAGATATTCCGGGTTAATTCCAAGTCCTGTCTTTCATCTTACGACACCAAAACCACTCATATTATGCCCTTTTGA 1617 0.5164 MKPTDGTVGGTQPLTTKVISIITPSSVVPSFPPLPSPPHHTQLFPTLRTCQRFSHPTPPKPTSHVTLPLTLSLFFKHHFLVRSIAHLSLSLSLSLSSHHTSLLPFLFYFIITFFSHSLTTMVRDDLYITVPSFFRCPISLDVMKSPVSLSTGVTYDRSSIQRWLDNGNNTCPATMQVLQTKEFVPNRTLQRLIQIWSDSLHHPLHSAHSPTSTHSQSLPSKDQILLAISDLQTRADNRFDSLAKIARFAQDSEENRDFLLKTECFVPLLVGFLHNVNGAVEFLEQVVMALDLVIGKMEDREELKNLILKAPGEAEKQSLDSLLVALRQGNHAAQIASVRVLTSVALDVESKLLIAEKEGLVSELLKLITPEKDPDLIENCLLCLVAISSPRRSKMKLVCLGAVKVLSKLLCASNMSVSVTEKVLKLVETVSSTKEGRLEICEDSACVAAIVNKVLKVSSVATEHAVTTLWSVCYLFRDETAQEAVTKANGLTKILLLMQSNCSPQVRQMSADLLKIFRVNSKSCLSSYDTKTTHIMPF* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1399 538 ProSiteProfiles U-box domain profile. 129 203 IPR003613 GO:0004842|GO:0016567
Vra1g1399 538 PANTHER WDSAM1 PROTEIN 124 538 IPR045185 GO:0061630
Vra1g1399 538 CDD RING-Ubox_PUB 134 176 IPR045210 -
Vra1g1399 538 SMART Ubox_2 133 196 IPR003613 GO:0004842|GO:0016567
Vra1g1399 538 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 124 538 - -
Vra1g1399 538 Pfam U-box domain 130 197 IPR003613 GO:0004842|GO:0016567
Vra1g1399 538 Gene3D - 227 526 IPR011989 -
Vra1g1399 538 SUPERFAMILY ARM repeat 238 520 IPR016024 -
Vra1g1399 538 SUPERFAMILY RING/U-box 124 198 - -
Vra1g1399 538 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 207 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1399 Vra-Chr1 21385648 21387545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1399 121 538 U-box Gene Family AT5G64660 52.448 3.00e-141 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1399 - - vra:106764800 973