Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1397 ATGAGTTTGGAGGGGACAGAAAGTTCAGAAGATGGTGCGGGTTATCTGGAGCCTCCTGATCCTGACTTTGTTGAAATTGATCCAACTTGCACCTACATCAAGTACAAAGAAGTGATCGGCAGAGGAGCTTTTAAAACTGTTTACAAGGCATTTGATGGAGTCAATGGAGTTGAAGTTGCGTGGAGTCAGGTTCAGATTGATGACTTGTTGCAATCCCCCGGTGACTTAGATAGGCTATATTCAGAATTACACCTCTTGAGATCACTGAAGCACCATAACATAGTAAGATTCTACGATTCCTGGATTGATGACAGGCGCAGGACCGTTAATATGATTACGGAGTTGTTTACCTCGGGTAGCCTCAAAAAGTTTCGTCAAAAACACAAGAAGGTCGACTTGAAGGCCGTTAAAGGATGGGCAAGACAAATTTTAATGGGTCTAAGCTATCTCCACGGTCACAACCCACCAGTTATTCACAGGGACCTGAAATGTGATAATATATTTATCAATGGTCACCAAGGAGAAGTTAAAATTGGAGATCTTGGGCTAGCAACTTTCTTGAATCGAAGTAATGCCAAGAGTGTTATTGGAACCCCGGAGTTTATGGCACCCGAGCTGTATGATGAAAATTACAACGAATTAGCTGACATATATTCCTTTGGCATGTGCATCCTTGAGTTGGTGACCTCTGAGTATCCTTACAGCGAATGCAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCCGGTATAAAACCTGCTTCGCTTTCTAAAGTGAAAGATCCAGAAATGAAATCATTTATTGAGAAATGTCTAGTCCCAGCATCTCAAAGATTGTCAGCCAAGGAGCTTCTGATGGACCCATTTCTTCAAATAAATGCTTCAATAAAGAAGGGTCCTTCTCCATTGCGGCATATTGTTCTTCCCAAATTGGGAGCCTCTGAAAGTCGTTGTATGGTGTCAGAAGGTCCTTCTAGTGCTCGTAATGGAGACATTCCAATGGATCTTGGTGACACATGTGAGCTTCCAGCGATCACTATATTTGACAAATCCACTGATGATGCATCACGTTCTACAAGTGTTGAGATAAGAAGGCAGAAAAGAGGTGATATTTTCTTCCTAAAAGGTGAAGAACATGATAAGAACTCTGTATCATTGGTTCTGCGGATAGCTGATCAAGGAGGGCGAGCAAGAAATATCCATTTCGTTTTCTACCTTGACAGTGACACTGCTGTCTCAGTTTCAAGCGAAATGGTTGAGCAACTTGAGCTTGCTGATCAGAATGTTAAATTCATAGCTGAGTTAATAGATTTGTTATTGATGAATCTGATTGCTGACTGGAAACCCTGTGTAGCAATTGATCACTTGGTTTCTCCTAGTAATAAACAAACTCATGTGAGCCAACGGGGAGAATTGGAGTTAGCAAAATGCACAGGCAGCTCAAAAGATTGGACTGAAGATTTAGGTCCCTCTACCTCCTCTGCAATATTAGCTACAAAAGGAAACCTTGACAATATGGATATCGATGGGGCTTTATCTGACGAGTGCAGTGGTCTTCAGAAAGCAACCAAGGCAGATGATCTATGCTCTGAGAAGTCGTATGCATCTGCAACAACTGACTTCAATGATAATAAGTTTTCCACGGTTTCATTTATGTCTGCTAAATCAGAATTTGATGGAGGGAGTAAATCCTCACCTACATCTGAAATTGGGGCATCATATGATCGTAAGAGCAAGTTTTTGGACATGAAAGGCTTCTCCAATATTCTGAACATCGCTTCCTCCTCGTCTGAAGCTGAGGGTGAGTTGAAATTAGAGTTACAAATGATTGAACAGAAGTATCAAGAGGCAATGAATGATTTATCCCAAAGAAGATACCAGGCCATCTTGGATATTAGAAGGAGAATGTCACAAAAGATGGTCTCGTAG 1929 0.4132 MSLEGTESSEDGAGYLEPPDPDFVEIDPTCTYIKYKEVIGRGAFKTVYKAFDGVNGVEVAWSQVQIDDLLQSPGDLDRLYSELHLLRSLKHHNIVRFYDSWIDDRRRTVNMITELFTSGSLKKFRQKHKKVDLKAVKGWARQILMGLSYLHGHNPPVIHRDLKCDNIFINGHQGEVKIGDLGLATFLNRSNAKSVIGTPEFMAPELYDENYNELADIYSFGMCILELVTSEYPYSECRNSAQIYKKVSSGIKPASLSKVKDPEMKSFIEKCLVPASQRLSAKELLMDPFLQINASIKKGPSPLRHIVLPKLGASESRCMVSEGPSSARNGDIPMDLGDTCELPAITIFDKSTDDASRSTSVEIRRQKRGDIFFLKGEEHDKNSVSLVLRIADQGGRARNIHFVFYLDSDTAVSVSSEMVEQLELADQNVKFIAELIDLLLMNLIADWKPCVAIDHLVSPSNKQTHVSQRGELELAKCTGSSKDWTEDLGPSTSSAILATKGNLDNMDIDGALSDECSGLQKATKADDLCSEKSYASATTDFNDNKFSTVSFMSAKSEFDGGSKSSPTSEIGASYDRKSKFLDMKGFSNILNIASSSSEAEGELKLELQMIEQKYQEAMNDLSQRRYQAILDIRRRMSQKMVS* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1397 642 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1397 642 SUPERFAMILY Protein kinase-like (PK-like) 35 291 IPR011009 -
Vra1g1397 642 MobiDBLite consensus disorder prediction 1 22 - -
Vra1g1397 642 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1397 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Vra1g1397 642 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 641 - -
Vra1g1397 642 Gene3D Phosphorylase Kinase; domain 1 19 114 - -
Vra1g1397 642 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1397 642 Coils Coil 600 620 - -
Vra1g1397 642 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Vra1g1397 642 Gene3D - 382 469 - -
Vra1g1397 642 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 5 641 - -
Vra1g1397 642 CDD STKc_WNK 32 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1397 Vra-Chr1 21352942 21356417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1397 133 464 MAP Kinase Kinase Kinase AT1G49160 66.867 2.97e-164 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vra1g1397 Pkinase 3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1397 K08867 - gmx:121175054 821.617