Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1394 ATGGATTATGAAGAATTTGATTTCTCGTTTGGTTCTCCTTATATGAACCAACTCCATGAGTGTTGCTTAGAAAATGCATTCCCATTTCAAACAGAAGATATATCATCACCAAATACCATAATGGATGAAATGTTTGGTGAAGAGTCTGTGGAGGGCTTGCTTCTGCAACACCCAAACAACCAGGACTTTGGTTTCATGAATCACAATGATCCACCAGAGATTGAATTCTGTGATGGATTTGGCTCTAGCCCTGAGGAAAATGTGCATGTTTCAATGGAAGAAGAAGAAGGGGATTGTTATTTGAAGGGAATCCAAGCAGAGCTGATGGAACAGACTAGTTTAGCTGATCTTTTGCTAACAGGAGCTGAAGCTGTTGAAGCACAAAACTGGGAACTTGCTACAGACATAATTGAGAAACTCAACAATGCATCATCTTTGGAAAAGGGTGATGGTTTGTTGAACAGGTTGGCTTTTTTCTTTGCTCAGGGTCTGTATTATAAAAGTACAAATGAACCTGAACTGTTGTTGCAGCGTGGTGCTGTTTCTACACACAGAGATGCTTTCTGTGTGTTTCAGGTTCTCCAAGAACTATCTCCCTATGTGAAATTTGCTCATTTCACGGCAAACCAAGCAATCTTAGAAGCCACAGAAGGTGTTGAGAATGTTCACATCATTGATTTTGACATCATGGAGGGAATCCAGTGGCCACCCTTGATGGTTGATCTTGCAATGAGGAAAAACAGTACTACTTCCCTTAGAGTATCAGCGATCACAGTGGACGAGAGAGGTGCTGCTTCTGCTGAACAAACAGGAAGAAGGCTGAAAGAGTTTGCAGCTTCTATAAACTTTCCATTTATGTTTGATCAAATGATGATGGAAAGAGAAGAAGATATTGAAGGAATTGAAGTTGGTGAAACAGTGATAGTGAACTGTATGATAGACCAGTGGATGCCTAATAGGAGCTTCTCAGTGGTGAAAACATTTTTGGATGGTGTGAGGAAACTGTGGCCGAGGCTTGTGGTTTTGGTGGAAGAAGAACTGTTTAATTTTTCAAGGCTGAAATCTATGTCCTTTGTGGAGTTCTTCTGTGAGGCTTTGCATCACTACAGTGCAGTTTGTGATTCACTTGGTAGTAGTGTGTGGGGTAGCCACAAGATGGAGTCGAGGCTGATAGAGAAAGAGATTTTGGGCCTCAGAATATTGGACAGTGTGAGACAGTTTCCTTGTGAGAAAAAGGAGAGAAAGGTTTGGGAAGAAGGGTTTTATTCCTTGAAAGGGTTTGAATGTGTTCCTATGAGTAGTTGTAATATTTCACAAGCCAAGTTCTTGGTGAGCCTCTTTGGTGGGGGGTATTGGGTCCAATTCGAGAAGGGTAGGTTGGCCTTGTGTTGGAAGTCACGGCCTTTGACTGTGGCTTCAATGTGGGTACCCAAGGATTATTCCAGTCACAAACTCAAATAG 1461 0.4182 MDYEEFDFSFGSPYMNQLHECCLENAFPFQTEDISSPNTIMDEMFGEESVEGLLLQHPNNQDFGFMNHNDPPEIEFCDGFGSSPEENVHVSMEEEEGDCYLKGIQAELMEQTSLADLLLTGAEAVEAQNWELATDIIEKLNNASSLEKGDGLLNRLAFFFAQGLYYKSTNEPELLLQRGAVSTHRDAFCVFQVLQELSPYVKFAHFTANQAILEATEGVENVHIIDFDIMEGIQWPPLMVDLAMRKNSTTSLRVSAITVDERGAASAEQTGRRLKEFAASINFPFMFDQMMMEREEDIEGIEVGETVIVNCMIDQWMPNRSFSVVKTFLDGVRKLWPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYSAVCDSLGSSVWGSHKMESRLIEKEILGLRILDSVRQFPCEKKERKVWEEGFYSLKGFECVPMSSCNISQAKFLVSLFGGGYWVQFEKGRLALCWKSRPLTVASMWVPKDYSSHKLK* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1394 486 Pfam GRAS domain family 115 475 IPR005202 -
Vra1g1394 486 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 477 IPR005202 -
Vra1g1394 486 ProSiteProfiles GRAS family profile. 105 476 IPR005202 -
Vra1g1394 486 PANTHER OS12G0162700 PROTEIN 3 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1394 Vra-Chr1 21343898 21346041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1394 114 475 GRAS Transcription Factor Family AT5G41920 33.854 4.09e-45 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra1g1394 GRAS 1.7e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1394 - - gmx:100804613 787.334