Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1392 ATGTATGCTTCAACTTCCTTTACTTCACATTTGCTTCATGACCTTCTCATGGACTCAAGCTCAAGAAAGCTACTCCTTCAAGACCCTCTCCATCAATCAATCAACGTAGCTGACTTGCCCAAATCCTCAGATTCCATCACTTACAACTCAACAGACTCCTATTTCAAAGGTCGTGACTTCGATGCAAATGTTGTCATGATACTCGCTGTGCTCTTGTGTGCTGTCATTTGCTCACTCGGCTTGAACTCCATCATAAAGTGTGTCTTGAGATGCTCAAACATAGTCATCAACGACCCTTCAACTGTCACCAACCCTTCATCCCGTTTGGCCAACACAGGCATCAAGAAGAAAGCCCTCAAGACTTTTCCCACCGTCAGCTACTCAACACAGTTCAAACTCCCAGCTTTGGACACCGAGTGTGTCATATGCCTCTCAGAGTTTGTCAATGCTGATAAGCTACGCATTCTGCCAAAATGCAACCATGGTTTCCACGTTCGCTGCATTGACAGATGGCTTAGCTCTCACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGTAAGAAAATTGTTGGATCCCAGCCACCAGTCCCACAAACCATTGTAAGGATCCAACCACTAGAACATGAAGCTTTGGAGCGTAACTATAGGGAACTATGCTAG 669 0.4559 MYASTSFTSHLLHDLLMDSSSRKLLLQDPLHQSINVADLPKSSDSITYNSTDSYFKGRDFDANVVMILAVLLCAVICSLGLNSIIKCVLRCSNIVINDPSTVTNPSSRLANTGIKKKALKTFPTVSYSTQFKLPALDTECVICLSEFVNADKLRILPKCNHGFHVRCIDRWLSSHSSCPKCRQCLIETCKKIVGSQPPVPQTIVRIQPLEHEALERNYRELC* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1392 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 186 IPR013083 -
Vra1g1392 222 SUPERFAMILY RING/U-box 126 187 - -
Vra1g1392 222 PANTHER RING-H2 FINGER PROTEIN ATL78 1 222 IPR044602 GO:0016567|GO:0016740
Vra1g1392 222 SMART ring_2 140 181 IPR001841 -
Vra1g1392 222 Pfam Ring finger domain 139 182 IPR001841 -
Vra1g1392 222 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vra1g1392 222 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1392 Vra-Chr1 21308036 21309105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1392 23 186 C3H Transcription Factor Family AT3G10910 45.614 8.57e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1392 K19040 - gmx:100527126 364.77