Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1383 ATGGATTCTAACGATTTTCGATCCATATTGGAGAGCGCGGGCATCGACATTTGGATGTTGATGGATGTCGCCATCGCAGTGGCGTCTGCTGATCACAGTGATGAATTGAGGCGTCGAAGAGACGGAATCGTTGAGCGCCTCTACGCGACGAGTTTCTTGTCATCATCGCGGTGTCCAAATTGTGACATCGACGACGTTAGAGAAACAGAGATGCAAAGCAATCCCTCCGCGGAGGAGGAAAAGGATACTTGCGAAGTTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCAACTTGAAGATCCTCACCAGTCCAAAGATTCGTTGTTGGAGTTGTTGCAGAATCTAGCAGACATGGATATTACATTCCGAGCCTTACAAGAGACTGATATTGGGAGGCATGTGAATCGGTTGCGGAAGCATTCGTCTAATGACGTTAAGAAATTGGTGAAGTTGCTAGTCAGGAAATGGAAGGAGATTATAGATGAATGGGTGAAGTTGAAGACGACAGGAGAAGCGAGTACTACTGTCATGGCTGACGAGGACTCGCCACAAGATAAAATCCAACAAAATGAACATCGTCAGATTCCCGATTTTGCAGACTCGTCAAATCCACACAATGAAAGTTTTGGGTCAGAGCACAACAACATTGAACCACAACAACGAAAACCAAAAGCAATTCCTCACAAAGAATCTCCCCTAAAACCATCGGCATCAGTTACTACTCCTACACTTGCACCTCAAAACAGACAAAGGGAGAGCAATTTTGAGTTGGATAAACTTGCTTCGGCGAGAAAGCGACTCCAAGAGAACTACAAAGAGGTTGCAAATGCCAAAAAGCAAAGAACGATCCAGGTGATGGATCTCCATGAGTTGCCAAAACCCAAGAATGCCTATTTCGGAAAAAGCAAAGGTGGCACCAGTCAGGGAAGACACTGGTGA 951 0.449 MDSNDFRSILESAGIDIWMLMDVAIAVASADHSDELRRRRDGIVERLYATSFLSSSRCPNCDIDDVRETEMQSNPSAEEEKDTCEVLFDDEQKKILEIKEQLEDPHQSKDSLLELLQNLADMDITFRALQETDIGRHVNRLRKHSSNDVKKLVKLLVRKWKEIIDEWVKLKTTGEASTTVMADEDSPQDKIQQNEHRQIPDFADSSNPHNESFGSEHNNIEPQQRKPKAIPHKESPLKPSASVTTPTLAPQNRQRESNFELDKLASARKRLQENYKEVANAKKQRTIQVMDLHELPKPKNAYFGKSKGGTSQGRHW* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1383 316 Coils Coil 261 284 - -
Vra1g1383 316 CDD TFIIS_I 92 165 - -
Vra1g1383 316 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 88 178 IPR035441 -
Vra1g1383 316 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 92 173 IPR035441 -
Vra1g1383 316 MobiDBLite consensus disorder prediction 200 220 - -
Vra1g1383 316 ProSiteProfiles TFIIS N-terminal domain profile. 90 167 IPR017923 -
Vra1g1383 316 SMART TFS2_5 95 166 IPR003617 GO:0005634
Vra1g1383 316 MobiDBLite consensus disorder prediction 200 259 - -
Vra1g1383 316 MobiDBLite consensus disorder prediction 238 255 - -
Vra1g1383 316 Pfam TFIIS helical bundle-like domain 115 164 IPR017923 -
Vra1g1383 316 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 316 IPR044790 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vra1g1383 Med26 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1383 - - gmx:100796457 476.478