Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1382 ATGGCAAAATCTGCAAAATCTCCCCAAACTGAACTTCCTCACAGAGCTTTTGGTTGGGCTGCTACAGACACTTCCGGGACCCTTTCGCCCTTTCATTTTTCCAGAAGGGAAAACGGCGCTGACGATGTCACCGTCCAGATTCTGTTTTGTGGGGTTTGCCATTCTGATCTTCACACTGTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCAGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGAAATAATGTGAAATACTTTAAAGCGGGTGATAAAGTAGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAATGTTGCCAACAGGATTTAGAGAATTACTGTCCCCGCCCTGTGTTTACCTATAATTCTCCTTATTATGATGGGACACGAACCCAAGGTGGTTATTCTAACATTGTGGTTGTCAACCAGCGTTATGTGCTCCGATTTCCTGACAACTTACCCCTTGATGCTGGTGCTCCACTGCTGTGTGCGGGGATAACCGTGTATAGCCCTATGAAATATTATGGGATGACAGAGCCTGGCAAACATTTGGGAGTGGCAGGGCTAGGTGGGTTAGGCCATGTTGCAATCAAAATTGGTAAGGCCTTTGGGCTGAAAGTTACTGTCATTAGTGGATCTCCAAACAAGGAAGCTGAGGCAGTTGACACACTTGGGGCTGATTCTTTCGTTCTTTCCTCAGACCCTGCAAAAATGAAGGCTGCTATGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGTCTCCACTGCTGGGTCTGCTGAAGCTGAATGGGAAGCTAATTACTGTAGGGTTGCCTAGCAAGCCTCTTGAGGTGCCTATCTTTCAAATAGCCGCAGGAAGGAAGCTTGTAGGGGGGAGCAACTTTGGAGGGATCAAGGAAACCCAGGAAATGCTTGATTTCTGCGGAAAACACAACATAACTGCAAATATCGAGCTGATTAAGATGGACCAAATCAACACTGCCATGGAAAGGCTTGGCAAAGGTGATGTGAAATATCGCTTTGTGATTGATGTGGCCAACTCTTTCTCCAGTTTGTAG 1092 0.4606 MAKSAKSPQTELPHRAFGWAATDTSGTLSPFHFSRRENGADDVTVQILFCGVCHSDLHTVKNDWGFTTYPVVPGHEIVGVVTKVGNNVKYFKAGDKVGVGVIVESCKECECCQQDLENYCPRPVFTYNSPYYDGTRTQGGYSNIVVVNQRYVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKIGKAFGLKVTVISGSPNKEAEAVDTLGADSFVLSSDPAKMKAAMGTMDYIIDTISAVHSLSPLLGLLKLNGKLITVGLPSKPLEVPIFQIAAGRKLVGGSNFGGIKETQEMLDFCGKHNITANIELIKMDQINTAMERLGKGDVKYRFVIDVANSFSSL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1382 363 CDD CAD1 17 355 - -
Vra1g1382 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Vra1g1382 363 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 14 360 - -
Vra1g1382 363 PANTHER ALDEHYDE REDUCTASE 14 360 - -
Vra1g1382 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 324 IPR036291 -
Vra1g1382 363 Pfam Alcohol dehydrogenase GroES-like domain 41 153 IPR013154 -
Vra1g1382 363 Gene3D - 170 326 - -
Vra1g1382 363 SMART PKS_ER_names_mod 26 354 IPR020843 GO:0016491
Vra1g1382 363 SUPERFAMILY GroES-like 23 188 IPR011032 -
Vra1g1382 363 Gene3D - 19 356 - -
Vra1g1382 363 Pfam Zinc-binding dehydrogenase 197 318 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1382 Vra-Chr1 21220018 21223446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1382 14 360 Monolignol Biosynthesis Gene Families AT2G21730 70.774 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1382 K00083 - gmx:100819684 637.106