Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1378 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACGTGGATTCCTCCAAGAAGAAGAAGGAGATCACCGACAAGATCGAGAGAAGTTACCGGAAGCGCGACGTCGACGACGATCCCCATGCCGACGAAAGGAGGAGCAAGAGAAGGGGCGACGACGACAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGGGATAGGGACAGAGAACGGGAACGTGACCGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGATGGAGAGAAGAAAGAGAGGGATAAGGATAGGGAGAGGAGGGATAAGGATAAGGATAAGGACAAGGACAAGGATAGGGATAGGAGAGATCGTGATAAGGATAAGGAAAAGGAGCGCGAGAGAAGAGAGAGGGATAGGGAACGAGAGGAGAGAGAGAGATCCAGAAGGAGCAGGAGTCGCTCCGAGAGAGACAGAGACCGGGAGCGAGATTTCGAAATGCGCGATGGACGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCATTAAAAGCAACAGAGAGAGATGTGTACGAGTTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCAAGACGATCCAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCTATTGCTCTCTCTGGTCAACTTCTTCTTGGACAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAACGCTTCTGGTGGAGCAGCTGGTGTAGCTGGTCCTTATGGAGCTGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAGCTACGGGAGATTTTTGAGCCATTTGGTCCTGTTGAGGTTGTCCAACTGCCTCTTGACTTGGAAACAGGCCACTGCAAGGGTTTTGGGTTTGTTCAATTTACCCATCTTGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACGGATCATGTTGGAAGTCAAGATACCACTGCAAAATCAGCAGACTTAGATGATGATGAAGGTGGATTGACTTTAAATGCTCACTCCAGAGCATTGCTGATGCAGAGGCTGGCTGGTGCTGACATTTCTGCAAGCATGGGTATGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTGTTAGCTTACCTATTGGTGCACCAGTTCTTCCAGCACAAGTTATGCCTACCCCAATGGTAGAACCTGTAGGAAGCCCAAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCTACCACTGAGTCGGAACCAGATTTTGATATAGACATTAAAGAAGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTCTATTTGCAATTTGAAACAGTGGAAGCAGCGAGTGCTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCAATCTTCATGCAACCACAATTATATGAAGCCAAGTTTAAAGGGGAGTGA 1641 0.4692 MDFDEYEYLEKTVEEDVDSSKKKKEITDKIERSYRKRDVDDDPHADERRSKRRGDDDNGGSKKDRDRDRDRDRERERDRSSGRHRSERERDGEKKERDKDRERRDKDKDKDKDKDRDRRDRDKDKEKERERRERDREREERERSRRSRSRSERDRDRERDFEMRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVGSQDTTAKSADLDDDEGGLTLNAHSRALLMQRLAGADISASMGMPVVNGSVPAQQAVSLPIGAPVLPAQVMPTPMVEPVGSPSECLLLKNMFDPTTESEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAIFMQPQLYEAKFKGE* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1378 546 Coils Coil 122 147 - -
Vra1g1378 546 SUPERFAMILY RNA-binding domain, RBD 289 536 IPR035979 GO:0003676
Vra1g1378 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 264 IPR000504 GO:0003723
Vra1g1378 546 Gene3D - 285 381 IPR012677 -
Vra1g1378 546 CDD RRM2_RBM23_RBM39 291 363 - -
Vra1g1378 546 Gene3D - 449 546 IPR012677 -
Vra1g1378 546 SMART rrm1_1 454 531 IPR000504 GO:0003723
Vra1g1378 546 SMART rrm1_1 188 260 IPR000504 GO:0003723
Vra1g1378 546 SMART rrm1_1 290 363 IPR000504 GO:0003723
Vra1g1378 546 Gene3D - 115 273 IPR012677 -
Vra1g1378 546 MobiDBLite consensus disorder prediction 13 159 - -
Vra1g1378 546 PANTHER CC1-LIKE SPLICING FACTOR 1 546 - -
Vra1g1378 546 TIGRFAM SF-CC1: splicing factor, CC1-like family 69 543 IPR006509 GO:0003723|GO:0005634|GO:0006397
Vra1g1378 546 MobiDBLite consensus disorder prediction 1 159 - -
Vra1g1378 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 361 IPR000504 GO:0003723
Vra1g1378 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 529 IPR000504 GO:0003723
Vra1g1378 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 256 IPR000504 GO:0003723
Vra1g1378 546 CDD RRM3_RBM39_like 452 534 - -
Vra1g1378 546 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 546 - -
Vra1g1378 546 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 382 471 IPR029123 -
Vra1g1378 546 SUPERFAMILY RNA-binding domain, RBD 180 273 IPR035979 GO:0003676
Vra1g1378 546 CDD RRM1_RBM39_like 188 260 - -
Vra1g1378 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 367 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1378 Vra-Chr1 21179436 21187180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1378 261 362 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 3.15e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1378 K13091 - gmx:100793461 716.072