Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1376 ATGGCAAATAATAGAGACCAGGGTAACGCCGGCGAAGCGAGAAACTATCATTCGTTGTCAATGCCGATGATGTTTTCGGGATTGGATAGGGAGAGGGAGATGTCGGCCATGATCTCTGCTTTGACTCAAGTTGTCAGCGGAGAGGAACATGATCATGATCATGATCACGATGACTCGCTTCTTCATCAAAACATTGATACAAGTGCAATTGGAGGTGGTGGTGTTGATGGTTTTACCATAACATCAAACATGGATTCTGGTTCCATCGGACCATCTTCTGCATGTTCATCTTATTGTGGGAACTCTGTTCCAAAGAGAAGGAGGGAAGGTGACGATACGAGTGATCTCCCACGTGGAATTTCTTTCCCTGCTATTTCAACATATGGAGTTGGGGAAAGTTCAAGAAGGATGAGAAGAGGGGAGAATAAGGTATACGATTACGAGTACAGGGCAGAGAAGGTGGGAATGGAAGAGGAACCAAAAAGGAAATACAGAGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCGGAAATAAGGGACCCATTCAAGGCTACCAGAGTGTGGTTAGGAACATTCGAGACCGCTGAGGATGCAGCCAGAGCCTACGATCAAGCTTCCTTACGTTTCAGAGGCAATAAAGCCAAACTCAACTTCCCCGAAAATGTCAGGCTCAGACACCAATCACCGGAACCACCACCAGCCGCACCCCTTTTCTCCATTGCGTCTACAACTGAACCCATTGTTCACACTCAGCCTCAAGGTTCACATGATTCCGGCAACTTTTACGAATATTGTTATTCGCATGTACATGAGTTTCCCGTGAGCCTCTATGACCAAGTTGCCGTCTCATCATCATTGCCGGCTTCTCAACTTCAATCTTCACCATCCTATTCTTCTTCCTCAACTATCACTTCTTCCCAACCATCTCTACTTTCCCCTCATGCTACGCATCTATCCCCATGGTCTTCTTCTGCCCCTCATTACACTAATACCTCCCATCCTTCCTCCTCCTAG 1017 0.472 MANNRDQGNAGEARNYHSLSMPMMFSGLDREREMSAMISALTQVVSGEEHDHDHDHDDSLLHQNIDTSAIGGGGVDGFTITSNMDSGSIGPSSACSSYCGNSVPKRRREGDDTSDLPRGISFPAISTYGVGESSRRMRRGENKVYDYEYRAEKVGMEEEPKRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDQASLRFRGNKAKLNFPENVRLRHQSPEPPPAAPLFSIASTTEPIVHTQPQGSHDSGNFYEYCYSHVHEFPVSLYDQVAVSSSLPASQLQSSPSYSSSSTITSSQPSLLSPHATHLSPWSSSAPHYTNTSHPSSS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1376 338 SUPERFAMILY DNA-binding domain 163 221 IPR016177 GO:0003677
Vra1g1376 338 Pfam AP2 domain 163 212 IPR001471 GO:0003700|GO:0006355
Vra1g1376 338 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Vra1g1376 338 PRINTS Ethylene responsive element binding protein signature 186 202 IPR001471 GO:0003700|GO:0006355
Vra1g1376 338 SMART rav1_2 163 226 IPR001471 GO:0003700|GO:0006355
Vra1g1376 338 PANTHER DNA-BINDING DOMAIN 2 328 IPR044808 GO:0003700|GO:0009873
Vra1g1376 338 CDD AP2 163 222 IPR001471 GO:0003700|GO:0006355
Vra1g1376 338 PANTHER DNA-BINDING DOMAIN PROTEIN 2 328 - -
Vra1g1376 338 Gene3D AP2/ERF domain 162 222 IPR036955 GO:0003700|GO:0006355
Vra1g1376 338 ProSiteProfiles AP2/ERF domain profile. 163 220 IPR001471 GO:0003700|GO:0006355
Vra1g1376 338 MobiDBLite consensus disorder prediction 99 120 - -
Vra1g1376 338 MobiDBLite consensus disorder prediction 290 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1376 Vra-Chr1 21153122 21155037 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1376 161 235 AP2-EREBP Transcription Factor Family AT2G33710 70.667 3.92e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra1g1376 AP2 3.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1376 - - var:108344045 568.54