Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1372 ATGGCAAGAGAGATAATGATTCTGCAGAAGCTGGATCATCCCAATGTCATCAAACTCAAAGGACTTGCAACATCAAGGATGCAGTATAGTCTTTATCTTGTTTTTCGTTACATGCACTCTGATCTTACAAGAATCATCTCTCGTCCTACGGATAAACTCACTGAACCACAGATCAAGTGTTATATGCAGCAACTGCTTCTGGGGCTACAGCACTGTCATGAGAGAGGAGTTATGCATAGAGACATTAAACCTTCCAACTTGTTAGTAGATAAAAAAGGGGTGCTAAAAATTGCAGATTTTGGGCTAGCAAATTCTTTTGCTATAAAACCTGAAGGGCCTTTCACTAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTCCTTTTGGGTTCGACAGATTATGGATATGAAATTGATCTCTGGAGTGCAGGATGCTTGTTGGCTGAGATGTTCCTTGGAAGGCCACTTATGCCTGGGAGAACAGAGGTTGAACAACTTCACATGATCTTCAAACTTTGTGGTACACCTTCTGCGGATTATTGGATGAGAAGGAAGCTAACGACGAGCTTATTTCCACCACTACATTACAAAGCTAATTATGATGAAAACTTTAAGGATTTTCCTTCCTCTGCTTCTGCTCTCTTGACTACACTTCTTCATCTAGACTCTCATGCACGTGCCACAGCTGCTTCTGCTCTTCAAAGCCAATTTTTCAAGTCAAGTCCATTAGCATGCGACCTTTCAGCTTTGACTGTAATATACAAAGACGAGGATGAATACTCCCAAACAAAAAGAAGAAAAAGGTACAATTTATATATATATATATATATATATATATATATATATATATGA 855 0.3906 MAREIMILQKLDHPNVIKLKGLATSRMQYSLYLVFRYMHSDLTRIISRPTDKLTEPQIKCYMQQLLLGLQHCHERGVMHRDIKPSNLLVDKKGVLKIADFGLANSFAIKPEGPFTNRVVTLWYRAPELLLGSTDYGYEIDLWSAGCLLAEMFLGRPLMPGRTEVEQLHMIFKLCGTPSADYWMRRKLTTSLFPPLHYKANYDENFKDFPSSASALLTTLLHLDSHARATAASALQSQFFKSSPLACDLSALTVIYKDEDEYSQTKRRKRYNLYIYIYIYIYIYI* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1372 284 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Vra1g1372 284 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1372 284 Pfam Protein kinase domain 2 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1372 284 PANTHER CELL DIVISION PROTEIN KINASE 1 270 - -
Vra1g1372 284 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1372 284 SUPERFAMILY Protein kinase-like (PK-like) 2 244 IPR011009 -
Vra1g1372 284 PANTHER CYCLIN-DEPENDENT KINASE 1 270 - -
Vra1g1372 284 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
Vra1g1372 284 Gene3D Transferase(Phosphotransferase) domain 1 40 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1372 Vra-Chr1 21117725 21121029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1372 3 269 Core Cell Cycle Gene Families AT5G10270 44.718 1.21e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra1g1372 Pkinase 1.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1372 K08819 - vra:106759135 545.428