Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1362 ATGTCAACAACTTCACATACAATTGGTCACCACAGCTTATTTGAGGAGCAGGATCAGATTCCTACACAGATGGGCTTCTTTCCTTTTTCATCAAATCTTACTTTGCCTCCTTTGGGTTGCCACCAATCCTCTTTGAAAGCCTTCAACTCCATAACAACACCTTCTTCACTTCCCATATCTCAACAAGATTCTTCTACATCAAATCTAACACAAACCCTATTTCACAAGTCAAGAGAACACCTCACTTCTACCTTTGGAGGACCTCAGTTTCTGTCCTTGCATAGATCCACTCTAAATCCATGGGCACTGGGAGAAGTGAGTGAGTGCTTCAGCAGTAAAAGAAGTGGATTTGATGATCATCATCATCTGGGAATTTCAGCCATGAAGATGAAGAAAATGAAGGCAAGAAGGAAGGTTAGAGAGCCTAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTATTGGACGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTTGTGAAGAACACGCAGCACCCCAGAAGCTATTACCGTTGCACACAAGATAACTGTCGTGTAAAGAAACGCGTGGAGCGCTTAGCGGAGGATCCAAGAATGGTGATAACAACATATGAAGGGAGACATGTTCACTCTCCATCAAATGATCTTGAAGATTCTTCATCTCCATCTCAACTTGGGAATTTCTTATGGTAG 699 0.4278 MSTTSHTIGHHSLFEEQDQIPTQMGFFPFSSNLTLPPLGCHQSSLKAFNSITTPSSLPISQQDSSTSNLTQTLFHKSREHLTSTFGGPQFLSLHRSTLNPWALGEVSECFSSKRSGFDDHHHLGISAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNDLEDSSSPSQLGNFLW* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1362 232 MobiDBLite consensus disorder prediction 217 232 - -
Vra1g1362 232 SUPERFAMILY WRKY DNA-binding domain 147 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra1g1362 232 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra1g1362 232 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 40 222 - -
Vra1g1362 232 Gene3D WRKY domain 142 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra1g1362 232 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra1g1362 232 Pfam WRKY DNA -binding domain 156 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra1g1362 232 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 40 222 IPR044810 GO:0003700
Vra1g1362 232 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1362 Vra-Chr1 21055050 21056900 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1362 125 232 WRKY Transcription Factor Family AT4G39410 77.876 1.29e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra1g1362 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1362 - - pvu:PHAVU_002G266400g 425.631