Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1360 ATGGGTCCCTTTACACTCTCCGTTATGGTTAATGACTCTGCCATTTCATTACCAGATGCTTGTTCGAAGAGAAAACAGAACTTTCTTCTGAAAAATTCTTTTGCATCGGTTAGCATGGGAGATGAAAAGCCTTTTGACTTCTTACGCACTTTATTTGAGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGCTTTATACCCAATCGACACTATTAAAACACGTCTGCAGGCTGCTCGCGGGGGAGAAAAACTAATATTGAAAGGCTTGTATTCCGGATTGGCAGGGAACCTTGCTGGTGTCTTACCGGCGTCTGCTTTATTTGTGGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGATATTTCCTGAAAATCTGAGTGCTTTTAGTCATTTAACTGCAGGTGCCATAGGAGGCATTGCTGCTTCATTGATTCGTGTTCCAACGGAGGTTATCAAGCAACGAATGCAAACTGGGCAGTTTACTTCAGCTTCTGGTGCCGTTCGCTTTATTGCTTCTAAGGAAGGCTTCAAAGGATTTTATGCTGGGTATGGATCTTTTTTGTTGCGAGATTTACCCTTTGATGCTATTCAGTTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGCACGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCCATAACTACTCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAGGATCTGCAAACCAATACAAGGGAATTGTTGACTGTGTTCAAACTATTATCAAGGAAGAAGGACCTCGTGCCTTTTTGAAGGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAACGTTTTCTTGCTGAGAGGCGTCCTATAGAATTTCAGCACACATACTCAGACAAAAGTAAAGATAAATAG 984 0.4167 MGPFTLSVMVNDSAISLPDACSKRKQNFLLKNSFASVSMGDEKPFDFLRTLFEGVIAGGTAGVVVETALYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLAGVLPASALFVGVYEPIKQKLLRIFPENLSAFSHLTAGAIGGIAASLIRVPTEVIKQRMQTGQFTSASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYMLAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIIKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLAERRPIEFQHTYSDKSKDK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1360 327 SUPERFAMILY Mitochondrial carrier 52 302 IPR023395 -
Vra1g1360 327 Gene3D Mitochondrial carrier domain 53 322 IPR023395 -
Vra1g1360 327 PRINTS Mitochondrial carrier protein signature 54 67 IPR002067 GO:0055085
Vra1g1360 327 PRINTS Mitochondrial carrier protein signature 67 81 IPR002067 GO:0055085
Vra1g1360 327 PRINTS Mitochondrial carrier protein signature 185 203 IPR002067 GO:0055085
Vra1g1360 327 PRINTS Mitochondrial carrier protein signature 230 252 IPR002067 GO:0055085
Vra1g1360 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 212 IPR018108 -
Vra1g1360 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 49 121 IPR018108 -
Vra1g1360 327 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 307 IPR018108 -
Vra1g1360 327 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 6 315 - -
Vra1g1360 327 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 6 315 - -
Vra1g1360 327 Pfam Mitochondrial carrier protein 51 85 IPR018108 -
Vra1g1360 327 Pfam Mitochondrial carrier protein 225 310 IPR018108 -
Vra1g1360 327 Pfam Mitochondrial carrier protein 130 211 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1360 Vra-Chr1 20990744 21002222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1360 128 313 Chloroplast and Mitochondria Gene Families AT1G07030 30.890 1.05e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1360 K15111 - gmx:100811130 589.341