Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1353 ATGGATTTCTTCTACTTTGGAAACCCCAACCCTTCTCATACTCATCATCTTCATAATAACATGCCTCCATCATCCCCTGAGATCGCACTCTCTGATTTCCTCCTTCTCGATGATTTCCTTCATCATCATCATGGTGACTCTCTATCATCTCAAAGCACTGAGTCATCGGAAAAACCAACCTTCAGTGATACCACTCATGGATTCACCACTGGTGCAACCTCTAAGAACAACAACAACATCATAAAGTGCAAGAACACGAATGGTGGAAGCAAAGCAAGGTTGGGTCCAAGAGTGGCATTCAGAACTAAATCAGAGCTTGAGATCATGGACGATGGATACAAGTGGAGGAAGTATGGTAAGAAGTCCGTGAAGAGCAGTCCAAATCTAAGGAACTATTACAAATGTTCAAGTGGAGGATGCAGTGTGAAGAAAAGGGTGGAAAGGGACAGAGAGGATTCCAGCTATGTGATAACAACATATGAAGGTGTGCACAATCATGAGAGCCCTTTTACCACATACTACAGCCCTATCTCTTTCCTACATTCTGATCATTCTACATCTTCCAAATGA 570 0.4263 MDFFYFGNPNPSHTHHLHNNMPPSSPEIALSDFLLLDDFLHHHHGDSLSSQSTESSEKPTFSDTTHGFTTGATSKNNNNIIKCKNTNGGSKARLGPRVAFRTKSELEIMDDGYKWRKYGKKSVKSSPNLRNYYKCSSGGCSVKKRVERDREDSSYVITTYEGVHNHESPFTTYYSPISFLHSDHSTSSK* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1353 189 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 174 IPR044810 GO:0003700
Vra1g1353 189 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 10 174 - -
Vra1g1353 189 MobiDBLite consensus disorder prediction 46 95 - -
Vra1g1353 189 Pfam WRKY DNA -binding domain 110 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra1g1353 189 ProSiteProfiles WRKY domain profile. 104 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra1g1353 189 SUPERFAMILY WRKY DNA-binding domain 101 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra1g1353 189 SMART WRKY_cls 109 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra1g1353 189 Gene3D WRKY domain 96 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra1g1353 189 MobiDBLite consensus disorder prediction 49 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1353 Vra-Chr1 20930501 20931979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1353 8 184 WRKY Transcription Factor Family AT5G64810 45.902 1.27e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra1g1353 WRKY 2.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1353 - - gmx:100500248 262.692