Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1350 TTGTGTTGGAATTGTTTCAGGGCTAGCGTTACCCCTGGCACAGTTTTGATTCTTCTTGCCGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTTCCTTCCGGGTTGCTTCTTGTAACTGGTCCTTTTAAGATCAACGGAGTTCCATTGAGACGTGTGAACCAGTCATATGTTATTGCCACATCAACCAAAGTAGATGTTTCTGCTGTTAACGTGGACAAATTTGATGACAAATACTTTTCAAAGGAATCCCAGAAAAAGAAGAAGAAGGGAGAGGGCGAGTTTTTTGAGGCTGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCATTGATAAAAGGCATAGAGAGTGTGCCGGACTTGAAAACTTATCTGGGTGCCAGGTTTTCCTTAAAGGATGGTGTGAAACCTCATGAGCTAGTCTTTTAG 465 0.4323 LCWNCFRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDKFDDKYFSKESQKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALIKGIESVPDLKTYLGARFSLKDGVKPHELVF* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1350 154 PANTHER 60S RIBOSOMAL PROTEIN L6 6 154 - -
Vra1g1350 154 SUPERFAMILY Translation proteins SH3-like domain 8 94 IPR008991 -
Vra1g1350 154 MobiDBLite consensus disorder prediction 89 116 - -
Vra1g1350 154 Gene3D - 8 92 IPR014722 -
Vra1g1350 154 CDD KOW_RPL6 7 154 IPR041997 -
Vra1g1350 154 PANTHER 60S RIBOSOMAL PROTEIN L6 6 154 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vra1g1350 154 Pfam Ribosomal protein L6e 47 154 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vra1g1350 154 ProSitePatterns Ribosomal protein L6e signature. 48 66 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1350 Vra-Chr1 20897004 20897982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1350 6 154 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 82.550 1.63e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1350 K02934 - gmx:100499766 244.973