Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1349 ATGGCGCCGAATCAGAGAACGCGAAAGGTTAGCAGAAACCCCGAATTGATAAGGGGCATTGGGAAGTACTCGAGATCNCAGATGTACCACAAGAGAGGGATTTGGGCTATCAAGGCTAAAAACGGCGGTGTTTTTCCTCGCCACGACCCTACTCCCAAACCTCAATCTCCCGCTCTTAAACCTCCCAAATTTTACCCTGCNGATGATGTCAAGAAGCCCCTTCTCAACAAGCACAAACCCAGACTCACTAAGCTCAGGGCTAGCGTTACCCCTGGCACAGTTTTGATTCTTCTTGCCGGTAGATTTAAGGGAAAGAGGGTAGTGTTTTTGAAGCAGCTTCCTTCCGGGTTGCTTCTTGTAACTGGTCCTTTTAAGATCAACGGAGTTCCATTGAGACGTGTGAACCAGTCATATGTTATTGCCACATCAACCAAAGTAGATGTTTCTGCTGTTAACGTGGACAAATTTGATGACAAATACTTTTCAAAGGAATCCCAGAAAAAGAAGAAGAAGGGAGAGGGCGAGTTTTTTGAGGCTGAGAAGGAGGAAAAGAGTGTGTTGCCCCAGCAGAAGAAAGATGACCAGAAAACTGTGGACTCTGCATTGATAAAAGGCATAGAGAGTGTGCCGGACTTGAAAACTTATCTGGGTGCCAGGTTTTCCTTAAAGGATGGTGTGAAACCCCATGAGCTAGTCTTTTAG 702 0.4587 MAPNQRTRKVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHDPTPKPQSPALKPPKFYPADDVKKPLLNKHKPRLTKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDKFDDKYFSKESQKKKKKGEGEFFEAEKEEKSVLPQQKKDDQKTVDSALIKGIESVPDLKTYLGARFSLKDGVKPHELVF* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1349 233 CDD KOW_RPL6 81 233 IPR041997 -
Vra1g1349 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 - -
Vra1g1349 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vra1g1349 233 PANTHER 60S RIBOSOMAL PROTEIN L6 1 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Vra1g1349 233 Pfam Ribosomal protein L6, N-terminal domain 4 57 IPR005568 GO:0003735|GO:0005840|GO:0006412
Vra1g1349 233 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Vra1g1349 233 Gene3D - 87 171 IPR014722 -
Vra1g1349 233 ProSitePatterns Ribosomal protein L6e signature. 127 145 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1349 Vra-Chr1 20890409 20891816 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1349 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.541 1.07e-118 336