Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1342 ATGACAGGGAAGAGAAACCAGACACCAACAACATCAACACCAACAACAACAATCAGTCCGGTGGGAAGTCCAACTTCTGGTAACATCTCAGACAGCTCCTCAAAAGAACAAGACAGGTTCCTCCCCATAGCCAACGTTAGCCGCATCATGAAAAGGGCACTCCCTCCCAATGCCAAAATCTCAAAGGAAGCTAAAGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATCACCGGTGAGGCCTCAGACAAGTGCCAGAGAGAAAAGAGGAAGACCATCAACGGTGATGATCTTCTCTGGGCCATGACAACCCTAGGATTTGAGAACTACGTTGGACCCTTGAAGCTCTACCTCAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCCATGGCCAAACAAGAAGAACACTCTCCAACACATCAAACCAATGATGGGGTGCCTGAACTCAACAAGCTGCCTCATTCTGCTGCAACAAAACCAGACTTCAACTCTTTCACTGCTGGTTTCTATTCTGTGGGGCCTCAATTAACACCTCCAAAGAGCTTCACAGATATTGGAGGAATCAACGGTTATAGAGACACCTCCATGAACAGTGTCATTGCTCAAAGTGCGGTCAGTGCTGATCAAGATGCAAGTGGTAATAGAATAATGCCATCCAACCTACGTTATAGGGTTGAATGGTAG 693 0.4632 MTGKRNQTPTTSTPTTTISPVGSPTSGNISDSSSKEQDRFLPIANVSRIMKRALPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTHQTNDGVPELNKLPHSAATKPDFNSFTAGFYSVGPQLTPPKSFTDIGGINGYRDTSMNSVIAQSAVSADQDASGNRIMPSNLRYRVEW* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1342 230 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Vra1g1342 230 Gene3D Histone, subunit A 29 162 IPR009072 GO:0046982
Vra1g1342 230 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vra1g1342 230 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 23 198 - -
Vra1g1342 230 SUPERFAMILY Histone-fold 37 152 IPR009072 GO:0046982
Vra1g1342 230 MobiDBLite consensus disorder prediction 129 156 - -
Vra1g1342 230 MobiDBLite consensus disorder prediction 1 38 - -
Vra1g1342 230 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Vra1g1342 230 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Vra1g1342 230 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Vra1g1342 230 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 198 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vra1g1342 230 MobiDBLite consensus disorder prediction 129 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1342 Vra-Chr1 20847407 20849183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1342 22 137 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.448 3.00e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vra1g1342 CBFD_NFYB_HMF 1.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1342 K08065 - gmx:100810059 353.214