Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1339 ATGATCTGGTTACCAGTTTTTGCAGTATTTCTTACTTACCTGTGGCTATGGAGAAGAAGGAAGAGAAATGGAAAGAGGTTATTACCACCTGGTCCGAAAGGGTTTCCTATTTTGGGGAGTCTTCACATGTTGGGGGAACACCCTCATCGTGATCTACACCAACTAGCTCTAAAATATGGACCTATCATGCACATGCGATTGGGTTTTGTGCCCACCATAGTTGTTTCTTCACCCAAAGCTGCTCAACTCTTCCTCAAGACCCATGATCTTATCTATGCCAGTAGACCACCTCATGAAGCTGCAAAGTACATCGCTTGGGAGCAGAAGAACTTAGCTTTTGCTCAATATGGTTCTTACTGGCGTAACACGCGTAAGATGTGCACGTTAGAATTGCTAAGCCAAGCCAAAATTAACTCCTTTAGACCCCTCAGGGATGCAGAACTAGACCTGTTGGTGAAGCATCTGAGAGAGGCAGCCAAGGATGGAGCTGTGGTTGATCTCAGTGCCAGAGTTGCAGCACTCATTGCAGACACTGCTTGTAGAATGATTTTAGGGAAGAAGTACATGGACCAGGACTTGGATGAGAAGGGTTTCAAGGCTGTGATGACAGAGATAATGTACTTGGCAGCAACTCCTAACATAGGTGATTACATTCCTTACATCGGTAAACTTGACCTTCAAGGGCTAATCAAGCGAATGAAGGCGCTGCGAAAAATCTTCGATGAATTCTTTGACAAAATCATCGATGAGCATATTGAATCAAAGAAGGGGGAGAACGACTTGAAGGACTTTGTCGACGTCATGTTGGGATTACTCGGTACTGAAGAATCGGAGTACTGCGTTGAAAGACCCAATATCAAAGCCATATTGCTGGATATGTTGCTTGGTTCAATAGATACTTCTGTTACAGCAATAGAGTGGGCAGTTTCGGAGCTGATAAAGAATCCAAGGGTGATGAAGAAACTCCAAATGGAACTGGAAAGCGTGGTGGGTATGGAGAGGAAGGTGGAAGAATCAGACTTAGAGAAGTTAGAGTATTTGGACATGGTTATAAAGGAAAGCATGAGGCTGCATCCAGTGGCACCGTTGCTGATACCACACGAGTCAAGGGAAGATTGCATGGTTGGAGAGTTTTTCATTCCTAAAAAGTCAAAGGTGATAGTGAATGCATGGGCTATTATGAGAGATCCAAGTGCTTGGGATGATGCAGAAAAGTTCTGGCCAGAGAGATTTGAGGGAAGCAGCATAGATCTAAAAGGGCATGACTTTGAGCTGATACCATTTGGATCTGGAAGAAGAAGCTGTCCAGGAATGCAACTTGCTCTAACTCTGGTTCGTCAGACAGTGGCACAAGTTGTCCATTGTTTTGATTGGAAGCTTCCAAATAACATGTTACCATATGAGTTGGACATGACAGAGGAGTTTGGACTCTCCATGCCGAGGGCCAATCATCTTCTTGCCATTCCCAGTCAACGCCTTCACTGTCTCACTGATTGA 1497 0.4449 MIWLPVFAVFLTYLWLWRRRKRNGKRLLPPGPKGFPILGSLHMLGEHPHRDLHQLALKYGPIMHMRLGFVPTIVVSSPKAAQLFLKTHDLIYASRPPHEAAKYIAWEQKNLAFAQYGSYWRNTRKMCTLELLSQAKINSFRPLRDAELDLLVKHLREAAKDGAVVDLSARVAALIADTACRMILGKKYMDQDLDEKGFKAVMTEIMYLAATPNIGDYIPYIGKLDLQGLIKRMKALRKIFDEFFDKIIDEHIESKKGENDLKDFVDVMLGLLGTEESEYCVERPNIKAILLDMLLGSIDTSVTAIEWAVSELIKNPRVMKKLQMELESVVGMERKVEESDLEKLEYLDMVIKESMRLHPVAPLLIPHESREDCMVGEFFIPKKSKVIVNAWAIMRDPSAWDDAEKFWPERFEGSSIDLKGHDFELIPFGSGRRSCPGMQLALTLVRQTVAQVVHCFDWKLPNNMLPYELDMTEEFGLSMPRANHLLAIPSQRLHCLTD* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1339 498 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 SUPERFAMILY Cytochrome P450 29 489 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 Pfam Cytochrome P450 29 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506|GO:0016705
Vra1g1339 498 Gene3D Cytochrome P450 18 491 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 174 192 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1339 498 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 2 494 - -
Vra1g1339 498 PANTHER CYTOCHROME P450 93A3-LIKE 2 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1339 Vra-Chr1 20814126 20816095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1339 9 493 Cytochrome P450 AT5G07990 40.771 8.59e-131 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1339 K20562 - vun:114179959 910.983