Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1338 ATGCACACTGCTATCCAATTCTTACTTGAACTCTGCCAATTAGATAAGATGATCTTGATGGCAATTCTTTTAGCTTCTCTTGCTTTTCTGTTGCTTTGCAGAAGCAAGAAGAAGGTAGATAATTTACCACCTGGTCCCACTGGGTTGCCAATTTTCGGAAGTCTTAACAAGTTGGGAGCATATCCTCATCGTGATCTGCATCAACTGGCCCAAAAATATGGACCTGTCATGCACTTACGCTTAGGTTTTGTGCCCACCATTGTTGTTTCTTCACCCCAAGCTGCTCAACTCTTCCTCAAGACCCATGACCTTCTGTTCGCCAGTAGACCACGTTATCAAGCAGAAAAATACGTCTCTTGGGGGCAGAGGAACTTAGCCTTTGCTGAATATGGCTCTTATTGGCGCAACATGCGCAAGATGTGCACGTTGGAATTGCTGAGTCAAACCAAAATTAATTCCTTCAGAAGCATGAGGGAAGAGGAGCTTGACCTGTTGATCAAGCTTCTGAAAGAGGCAGCCAATGATGGAGCTGCTGTTGATATCAGTGCAAAGGTTTCAAAGTACAGTTTAGACATGGCTTGTAGAATGATTTTAGGGAAGAAGTTTATGGACCAGGACTTGGATGACAAAGGGTTCGAGGCTGTGATGACAGAGATAATGTACTTGGCAGCAACTCCTAACATGGGAGATTACATTCCTTATATCGGCGCACTTGACCTTCAAGGGATAACTAGGCGCTTGAAGGTGGTTCACAGAATCTTCGATGAGTTCTTCGAGAAAATTATTGACGACCACATGGAATCAGGGAAAAGAGAAGACAAGACAAAGGATTTCGTGGATGTCATGTTGGGCTTTTATGGTACTGAGAATTCTGAATACCGCATTGAACGTGCCAATATTAAAGCCATAGTGATGGATATGTTGGCTGGGTCAGTGGACACTTCTGCTACATCAGTAGAGTGGGCATTTTCAGAGCTGCTAAAGAATCCAAGGGTGATGAAGAAACTTCAAATGGAATTGGAAAGCGTGGTGGGTATGGAGAGGAAGGTGAAAGAATCAGACTTAGAGAAGTTAGAGTATTTGGACATGGTTGTAAAGGAAAGCCTGAGACTGCATCCGGTGGCACCTTTGCTGATACCACACCAGTCCATAGAAGACTGCATGGTTGGAGATTATTTCATTCCTAAAAAATCAAGGGTTATAGTGAATGCATGGGCTATTATGAGAGACCCAAGTGCTTGGGATGAACCAGAGAAATTCTGGCCAGAGAGATTTGAAGGAAGGAACATAGATGTTAGAGGGAATGAGTTTGAGCTGATACCATTTGGGTCTGGCAGAAGGCGATGTCCAGGAATGCAACTTGCTCTAACCGTGGTTCGTGAGACATTGGCTCAACTTGTTCATTGTTTTGATTGGAAACTGCCAAATGACATGTTGGGAGATGAGTTGGAAATGACAGAGAAGTTCGGACTCACAATGCCAAGGGCTAATCATCTATTTGCCATTCCTACCTATCGACTTTCACATGAAAGGGGTTGTTAG 1542 0.4371 MHTAIQFLLELCQLDKMILMAILLASLAFLLLCRSKKKVDNLPPGPTGLPIFGSLNKLGAYPHRDLHQLAQKYGPVMHLRLGFVPTIVVSSPQAAQLFLKTHDLLFASRPRYQAEKYVSWGQRNLAFAEYGSYWRNMRKMCTLELLSQTKINSFRSMREEELDLLIKLLKEAANDGAAVDISAKVSKYSLDMACRMILGKKFMDQDLDDKGFEAVMTEIMYLAATPNMGDYIPYIGALDLQGITRRLKVVHRIFDEFFEKIIDDHMESGKREDKTKDFVDVMLGFYGTENSEYRIERANIKAIVMDMLAGSVDTSATSVEWAFSELLKNPRVMKKLQMELESVVGMERKVKESDLEKLEYLDMVVKESLRLHPVAPLLIPHQSIEDCMVGDYFIPKKSRVIVNAWAIMRDPSAWDEPEKFWPERFEGRNIDVRGNEFELIPFGSGRRRCPGMQLALTVVRETLAQLVHCFDWKLPNDMLGDELEMTEKFGLTMPRANHLFAIPTYRLSHERGC* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1338 513 Pfam Cytochrome P450 43 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS P450 superfamily signature 310 327 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 18 508 - -
Vra1g1338 513 PANTHER CYTOCHROME P450 93A3-LIKE 18 508 - -
Vra1g1338 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Vra1g1338 513 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 188 206 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 299 316 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 319 345 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 362 380 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 403 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 Gene3D Cytochrome P450 32 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g1338 513 SUPERFAMILY Cytochrome P450 43 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1338 Vra-Chr1 20808233 20810435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1338 18 508 Cytochrome P450 AT5G07990 38.889 8.46e-130 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1338 K20562 - gmx:100809526 795.423