Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1334 ATGGATGCTTCATCCTCACAGTTTGTTTCCTCAAGAAGAATGGAAGTGTATGATCCTATCCATCAAATTAGCATGTGGGAAGAAAATTTCAAAAGTAATGCTAATACTTTAACTGCATCCACCTCCATAATTGAAGAGCTGGACATGAAGTTTGATAATCAAGTTCAGGCGCAATCAGAGGAGGTTTCTCATGGCATATTTGGAACATCTGTGAAGTACAACCAAGATCATAATAGACTGGTTGATAAGACACAAAGACGTCTTGCTCAAAATCGAGAGGCTGCTCGGAAGAGTCGTTTGAGGAGAAAGGCATACGTGCAACAGTTGGAATCATGTCGTTTGAAGCTGATGCAGTTAGAGCAAGAGGTAGATCATGCTAAACGACAGGGATTGTATATCGGTGACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAGCAACTTTTAAGATGGAGTACGAACATTGGGTAGAGGAGCAAAACAGACATATCTTGGAAATGAGAACTGCTTTAAGTTCTCAGATAGGTGACATGCAACTGGGGAACCTTGTACAAAGCATAATGAACCACTACTCCAAACTCTTTAGCATGAAATCTGCTGCTGCAAAAGCAGATATTTTCTACGTTATGTCTGGCATGTGGATGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTTAAGGTTCTGATCCCTCTGAGTGGACCTTTGACAGAGCAGCAACTGTTTGATACATATGGCCTAGAAAAATCATGCCAACAAGCAGAAGATGCCCTTTCACAAGGAATGGAAAAACTTCAGCAAATGCTTGCTGACAGTGTTGGGCGAGGACACTTAGTTGAAGGAACCCACATTCCACAGATGGATACTGCAATGGAGAGATTGGAAGCTCTGGTGAGCTTTGTCAATCAGGCTGATCATCTACGACAAGAAACCTTGCGGCAAATGTATCGAATACTTAGCATACGTGAGATTGGTCAGTTTCTGCTTGTTCTAGGAGAATATTTTCAACGCTTAAGGGCTTTGAGCAAACTTTGGGCTAATCGATCTCGAGAAGCACTTCCTTAG 1107 0.4201 MDASSSQFVSSRRMEVYDPIHQISMWEENFKSNANTLTASTSIIEELDMKFDNQVQAQSEEVSHGIFGTSVKYNQDHNRLVDKTQRRLAQNREAARKSRLRRKAYVQQLESCRLKLMQLEQEVDHAKRQGLYIGDGLGSNNLGFAGSVNSGIATFKMEYEHWVEEQNRHILEMRTALSSQIGDMQLGNLVQSIMNHYSKLFSMKSAAAKADIFYVMSGMWMTTAERFFLWIGGFRPSELLKVLIPLSGPLTEQQLFDTYGLEKSCQQAEDALSQGMEKLQQMLADSVGRGHLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILSIREIGQFLLVLGEYFQRLRALSKLWANRSREALP* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1334 368 Pfam bZIP transcription factor 83 111 IPR004827 GO:0003700|GO:0006355
Vra1g1334 368 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 366 - -
Vra1g1334 368 SUPERFAMILY Leucine zipper domain 83 124 IPR046347 GO:0003700|GO:0006355
Vra1g1334 368 SMART brlzneu 79 139 IPR004827 GO:0003700|GO:0006355
Vra1g1334 368 Gene3D - 82 131 - -
Vra1g1334 368 Pfam Seed dormancy control 170 244 IPR025422 GO:0006351|GO:0043565
Vra1g1334 368 ProSiteProfiles DOG1 domain profile. 152 362 IPR025422 GO:0006351|GO:0043565
Vra1g1334 368 Coils Coil 265 285 - -
Vra1g1334 368 Coils Coil 102 129 - -
Vra1g1334 368 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 86 101 IPR004827 GO:0003700|GO:0006355
Vra1g1334 368 PANTHER TRANSCRIPTION FACTOR TGA9 1 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1334 Vra-Chr1 20775274 20780375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1334 1 366 Calmodulin-binding Proteins AT5G65210 61.622 1.32e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra1g1334 DOG1 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1334 K14431 - gmx:100780003 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1334 1 20775274 20780375 Vra2g1516 2 23139450 23144442 PCT