Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1332 ATGACAAGGTCTGTGTGTGAGTTCTTGTATGAGCTTTATGCCAAGACAATAGTCCTTTTAACATACATGCTAATACAACTTATCCTTATCATTCGCTACCTTAAATCAAACACACCTGCAATATCAACCACCCAATACCTCAGTTTCATCGAAGAGAAGAACCCCGCCATTCGTTGCACCACAAGACTCAAGGCAGAGCACATAGACTGCAGAGTTTGTCTCTCTGAATTCCAGGAAGGGGAGAAGGTCAGGAACCTCAACTGCAGACACACTTTTCACAAGGATTGCTTGGACCAGTGGTTGCAGCAATACTGTGCTACTTGCCCACTTTGCAGACACAAGGTCTTGCCAGATCATGTTGTCGCCAACTACAACCTCCTTCAAAATCATCTACGAGAAGAAGAAGAAGAAGACTACGATGGCAATGATCACCAACTCATCTTTTTCTTATCTGCATTAAGGGGTGGTAGCACTTGGCACACATATCTCTGA 492 0.439 MTRSVCEFLYELYAKTIVLLTYMLIQLILIIRYLKSNTPAISTTQYLSFIEEKNPAIRCTTRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRHKVLPDHVVANYNLLQNHLREEEEEDYDGNDHQLIFFLSALRGGSTWHTYL* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1332 163 CDD mRING-H2-C3H2C2D_ZSWM2 70 112 - -
Vra1g1332 163 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Vra1g1332 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 4 158 - -
Vra1g1332 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 117 IPR013083 -
Vra1g1332 163 SMART ring_2 70 111 IPR001841 -
Vra1g1332 163 Pfam Ring finger domain 69 112 IPR001841 -
Vra1g1332 163 PANTHER - 4 158 - -
Vra1g1332 163 SUPERFAMILY RING/U-box 49 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1332 Vra-Chr1 20741732 20742999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1332 69 122 C3H Transcription Factor Family AT1G15100 57.407 8.07e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1332 K16282 - gmx:102669811 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1332 1 20741732 20742999 Vra2g1514 2 23113105 23113889 PCT