Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1328 ATGGCCACTACACTTGCTTGGAGACACGCTGCCAACAATGCAAATGATCTGGAAAGAAATGGTGATAGGAATACTCAAGATTCAGAGCCCGCAACTCCACATTCTGTTTTGAAGATGGGATTTAGAGAGCGTAACAGCAGCATGGAGGATCCAGATGGAACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCTTATTCTGTGCAGGAGAAAGAGTATTCCTTAAGACAGCTATTGGAGCTTATAGATATGCGGGAAAATGCTTTTAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCAGGTCTGGTTCATTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGCTCCCTTTGTAAAGAAAATGAACTAAGGGTGAAGGTCTTGCTTGGAGGATGCATTCCTCCATTGCTTAGTCTATTAAAGTCCAGTTCTACCGAAGGACAAATTGCTGCTGCAAAGACTATTTATGCTGTTTCTCAGGGTGGTGTAAAGGATCATGTTGGTTCAAAAATATTTTCAACTGAAGGAGTTGTACCAGTGCTCTGGGAGCAGCTGAAAACTGGTCTAAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAACACTGAGGGATTCTGGAATGCAACTATACGAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGGCAAAAGGACAGCCCAGCAGTTTAGCAAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAACAACTTCTTAAACTATTAGGCCCTGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGAGGCAAGGCGAGAGATAGCCAATGCTAATGGTATTCCTTCTCTGATCAATGCTACCATAGCTCCTTCCAAAGAATTCATGCAGGGTGAGTGTGCTCAAGCATTACAAGAGAATGCTATGAGTGCTCTAGCAAACATCTCTGGTGGTTTGTCTTATGTCATATCTAGCCTTGGTCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCTGACACATTAGGAGCTTTGGCATCAGCTCTCATGATTTATGATAGCAAGGCAGAATCAACCAGAGCATCAGATCCTTTGGTTGTCGAGCAGACATTACTCAAACAATTTGAACCTCGCTTGCCCTTCCTTGTGAAGGAACGAACCATTGAAGCACTTGCTAGTTTGTATGGAAATTCCGTACTTTCAAATAAACTTGCAAATGCGGATGCCAAACATCTGCTAGTTGGTTTGATAACAATGGCTGCAAATGAAGTGCAAGACGAGCTTATAAAAGCTCTGTTGACAGTGTGCAAAAGTGAAGGCAGTCTATGGCGTGCACTTCAGGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAGTGTGCAGTTGCCCTGCTTTGCCTTCTATCATTTGAAAACGATGAAAGTAAATGGGCGATTACTGCAGCTGGTGGCATACCTCCACTTGTTCAAATTTTGGAGACAGGATCAGCAAAAGCAAAGGAAGATTCAGCAACAATCCTTAAGAACCTGTGCAATCATAGCGAAGATATACGCGCTTGTGTTGAAAGTGCCGATGCTGTTCCTGCATTATTGTGGCTATTGAAAAATGGAAGCCCAAATGGGAAGGATATTGCTGCAAAAACTTTAAATCATTTAATTCATAAATCTGATACTACAACTATTAGTCAGCTTACAGCTTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTTTTGGACGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTATTGACATTTTACGTGAAGGTAGTGCTGCCAGCGATGCATTTGATACTATGATAATATTATTGGGCTCTGCCAAAGAAGAAACTCAGGCAAAGTCTGCATCGGCTCTGGCAGGAGTTTTTGAAACAAGGAAAGATGTGCGTGAAAGTAGCATAGCTGTCAAAACTCTTTTGTCAGCCAAGAAATTGCTCAATGCTGAATCTGAAAGTATCCTGATTGAGTCCTCCCACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTACTATCGCCAGAGACACATTATCCCCTCTAGTTTCACTAGCAAATTCTTCAGTTTTGGAAGTTGCAGAGATGGCCACATGTGCTCTGGCAAACCTTATTTTGGATGGTGAAATTGCAGAGAAAGCTATTGCAGAAGAAGTTATCTTACCTGCCACTAGAATATTATGTGAAGGCACAATTTCCGGAAAAACTCATGCTGCAGCTGCAATTTCTCGCCTCTTACATTCTCGGGCTGTTGATTATGCTGTAACTGATTGTGTGACTCGTGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTCAATGGATCTGTTGCTACATCGGAGGCTCTAGAAGCACTTGCCATACTGTCCAGGTCGGTAGAGACCAGAGAAAATATTAAATCTGCTTGTGCTGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTCTTGTGTATTGTTGATTCGGAGCCAATGTTGCAGGATAAAACTATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGAGAGACTATTGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAGAGGATAATTAGTTCCACAAATGTAAAGGTCAAAATTGGGGGAGCAGCGCTCCTTATTTGTACTTCTAAGGCAAATCATCAGAGACTGGTGGAGGATCTAAGTTCATCGAATTTGTGTGTCGATCTTATTCGATCTCTTGTTGATATTCTTGTTTCTGCAGTGCCTTCTTCGGGTTACCTGGATGGTGACAACCAGGAGCTCATTAGCATATGCAGGCACATAACAGAAGAGGCCAACAGTTCTGAATCCAACACTAGCATTATCTGTGGTGTTGACTTGGTGCTATGGCTACTGTCTATTCTTGCTTGTAATGATGACAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATTGACAGAATCTCGAATTGTTTCTCGCAATATTCTCAGATTGACTACAAAGAAGATAGTGTCATGTGGATTCACGCTTTGTTGTTGGCGATCTTGTTTCAAAATAGAGATATCATACGGGCACATCCAACTATGAAATCTGTACCAGCACTTACCAGTTTAATGAAATCAGAGCCATCAGCAAACAAATATTTTGCTGCACAATCTATAGCTAGCCTTGTCTGTAATGGTAGCAGGGGAACACTCCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTCTTTGGTGCGTTATCCTGATCAAGTGGCTCTTGAAAGGTTGTTTCGAGTTGAAGATATAAGGGTTGGAGCCACTTCTCGAAAGGCTATACCAGCCTTAGTTGATCTGCTCAAACCAATTCCAGATCGTCCAGGGGCACCCTTTTTGGCACTTGTACTTTTGACTCAGCTCGGTAAAGATTGTCCTTCAAATATGAGTGTAATGGTGGAGTCTGGAGCCTTAGAGGCACTTACGAAGTATCTTTCACTCAGTCCGCAAGATGCAACTGAAGAAGCTGCTACAGATCTTCTAGGAATTCTGTTTAGCAGTGCTGAAATAAGAAGACACGAATCAGCATTTGGCGCTGTTGCTCAACTTATAGCTGTGCTACGGTTAGGAGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCTGCTGACCACATCAGAAATGCAGAGATTGCTCGGCAGGCTGTTCAACCATTGGTGGAGATTCTCAGTACTGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGGTGGGGTTACTGAGTGAAAATCCATCAAGAGCTCTTGCTGTTGCAGATGTTGAGAAGAATGCAGTGGAAGTTCTTTGTAGGATCCTTTCATCAAGTTGTTCAATGGACCTGAAAGGGGATGCTGCTGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGCTCCACAGCAGCTGCTGCAAGTTGTGTTGAACCTCTTGTCTCTCTCCTTGTATCTGAGTTCAGTCCAGCTCAGCTTTCAGTTGTCAGGGCACTGGATAGGCTTGTTGATGATGAGCAACTGGCAGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTAGTTGGCCTACTGTCGGGTACAAATTATATACTACATGAGGCCATTTCCAGAGCTCTAGTCAAGTTGGGAAAAGACAGGCCTGCTTGTAAAATGGAGATGGTTAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCCGATTATCTGTGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACTAATAATGCTAGTATAGCTAAAGGATCATCTGCTGCTAAAGTGGTTGAACCACTATTTTTGTTACTGACAAGGCAAGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCAAAGTGTCGAGCTGACCATTCATTAACTTCTCGCCAAGTTATTGAACCACTTATCCCTTTGCTCGATTCTTCAATTTCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTCTCGAAGAACGTCTTCAGAAGGATCCCGTGACACAGCAAGCAATTGGCCCTCTCATTCGAGTTCTTGGTTCTGGTGTACACATACTGCAGCAGAGAGCTGTAAAAGCCCTTGTTAGTATTGCACTAACATGGCCAAACGAAATTGCTAAAGAGGGTGGTGTCATTGAAATTTCCAAAGTGATATTGCAAGCTGATCCTTCCCTTCCTCACGCTTTATGGGAGTCTGCCGCCTCCGTTTTGTCTAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTGCCTATTGCTGTATTGGTAAGGTTGCTTCGATCTGGCTCAGAGACCACGGTTGTTGGTGCTTTAAATGCTCTTTTGGTGCTAGAAAACGATGATGGAACTAGTGCAGAAGCTATGTCGGAAAGTGGAGCTATAGAGGCTCTCTTGGAGCTCCTGCGATCTCATCAGTGTGAGGAAACTGCCGCAAGACTTTTAGAAGTATTGCTGAACAATGTAAAGATTCGAGAAACAAAAGTAACAAAATCAGCTATTGTACCATTGTCGCAGTACCTTTTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTATTGGCAACTTTGGCTCTCGGGGATCTGTTTCAGAATGAGGGCCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTAAACGTGCTTGAAGACCAACCAACAGAAGAAATGAAAGTTGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTATAGTCGATCAAATAGAAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTACTGGATCTGATAGGTTCAAGTAATCCAGAAACATCTGTTCAGGCTGCGATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCCAGTGAAACAGTCAGAGCGATAACTGCTGCTATTGAAAAAGATTTATGGGCTTCTGGAACCGTGAATGACGAGTATCTGAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTTAGAGCAACTGAACCATCGACACTTAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAAGCGTGTCAGGAAGCAGCATTAGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCACTGCTGCAGTACTTAATACAGTCTGGGCCACCTCGGTTTCAGGAGAAAGCAGAATTTTTGTTGCAGTGTTTGCCGGGGACATTGGTAGTGATCATCAAACGTGGTAACAATATGAAACAATCCGTTGGAAACCCAAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCCCCAAGGCAAACCCAGGTGGTTTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTTCATGGACTTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTCGGGAAAGTAACAATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTGGCTGGAGAGTACGCTTTGTTGCCTCAAAGTAAAAGTGGGCCGCCACGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6435 0.4308 MATTLAWRHAANNANDLERNGDRNTQDSEPATPHSVLKMGFRERNSSMEDPDGTLASVAQCIEQLRQSSYSVQEKEYSLRQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLSLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWEQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIRAGGVDILVKLLAKGQPSSLANVCNLLASVMMEDASVCSKVLTAEVTKQLLKLLGPGNDDSVRAEAAGALKSLSAQCKEARREIANANGIPSLINATIAPSKEFMQGECAQALQENAMSALANISGGLSYVISSLGQSLESCTSPTQIADTLGALASALMIYDSKAESTRASDPLVVEQTLLKQFEPRLPFLVKERTIEALASLYGNSVLSNKLANADAKHLLVGLITMAANEVQDELIKALLTVCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSFENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLIDILREGSAASDAFDTMIILLGSAKEETQAKSASALAGVFETRKDVRESSIAVKTLLSAKKLLNAESESILIESSHCLAAIFLSIKENRDVATIARDTLSPLVSLANSSVLEVAEMATCALANLILDGEIAEKAIAEEVILPATRILCEGTISGKTHAAAAISRLLHSRAVDYAVTDCVTRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSVETRENIKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGETIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTSKANHQRLVEDLSSSNLCVDLIRSLVDILVSAVPSSGYLDGDNQELISICRHITEEANSSESNTSIICGVDLVLWLLSILACNDDKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYKEDSVMWIHALLLAILFQNRDIIRAHPTMKSVPALTSLMKSEPSANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALVLLTQLGKDCPSNMSVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRRHESAFGAVAQLIAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEKNAVEVLCRILSSSCSMDLKGDAAELCCALFGNTRIRSTAAAASCVEPLVSLLVSEFSPAQLSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLSGTNYILHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGSSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPKCRADHSLTSRQVIEPLIPLLDSSISAVQQLAAELLSHLLLEERLQKDPVTQQAIGPLIRVLGSGVHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSETTVVGALNALLVLENDDGTSAEAMSESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSNPETSVQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNDEYLKALNSLFSNFPRLRATEPSTLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWDESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK* 2145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1328 2144 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 16 2144 - -
Vra1g1328 2144 Gene3D - 1673 1796 IPR011989 -
Vra1g1328 2144 SMART arm_5 1562 1600 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 263 304 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1432 1472 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1850 1890 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 89 130 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 520 560 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 728 766 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1222 1263 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 812 854 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1474 1514 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 562 602 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 477 518 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1305 1345 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1723 1762 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 306 355 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 1391 1431 IPR000225 GO:0005515
Vra1g1328 2144 SMART arm_5 131 171 IPR000225 GO:0005515
Vra1g1328 2144 Gene3D - 1357 1666 IPR011989 -
Vra1g1328 2144 Gene3D - 43 406 IPR011989 -
Vra1g1328 2144 Gene3D - 407 647 IPR011989 -
Vra1g1328 2144 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 531 573 IPR000225 GO:0005515
Vra1g1328 2144 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2023 2126 IPR035892 -
Vra1g1328 2144 SMART C2_3c 2024 2120 IPR000008 -
Vra1g1328 2144 Pfam C2 domain 2023 2112 IPR000008 -
Vra1g1328 2144 SUPERFAMILY ARM repeat 48 769 IPR016024 -
Vra1g1328 2144 CDD C2 2025 2115 - -
Vra1g1328 2144 SUPERFAMILY ARM repeat 1177 1559 IPR016024 -
Vra1g1328 2144 Gene3D C2 domain 2021 2144 IPR035892 -
Vra1g1328 2144 SUPERFAMILY ARM repeat 1670 2021 IPR016024 -
Vra1g1328 2144 ProSiteProfiles C2 domain profile. 2004 2121 IPR000008 -
Vra1g1328 2144 SUPERFAMILY ARM repeat 60 389 IPR016024 -
Vra1g1328 2144 Gene3D - 648 863 IPR011989 -
Vra1g1328 2144 Gene3D - 1807 2019 IPR011989 -
Vra1g1328 2144 Coils Coil 292 319 - -
Vra1g1328 2144 Pfam Armadillo/beta-catenin-like repeat 99 129 IPR000225 GO:0005515
Vra1g1328 2144 Pfam Armadillo/beta-catenin-like repeat 520 559 IPR000225 GO:0005515
Vra1g1328 2144 MobiDBLite consensus disorder prediction 1 36 - -
Vra1g1328 2144 SUPERFAMILY ARM repeat 701 998 IPR016024 -
Vra1g1328 2144 Gene3D - 870 1356 IPR011989 -
Vra1g1328 2144 SUPERFAMILY ARM repeat 986 1152 IPR016024 -
Vra1g1328 2144 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 16 2144 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1328 Vra-Chr1 20692677 20703856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1328 277 611 U-box Gene Family AT3G46510 26.453 3.95e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1328 - - gmx:100794002 3803.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1328 1 20692677 20703856 Vra2g1511 2 23070946 23081338 PCT