Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1326 ATGGCACTCTCACTGTGTTCCGGTGTTCGCGTTCCTTATTGCTCTCCTTCGTGTTTTTGGAAACCGAATGGTAAGAATTGCGAAGCGCCTACTAAGTTGCCATGTGCAGTTCACAGTAACAAAAATCCATTGGTTGGAATGGGTATTGGGTTGGTAACGGCTTGGGTGATGGGTTTAACGGCATTGGACGCGGACGCCACAAGAATCGAATACTACGCTACCGTTGGAGAGCCTTTGTGTGAGTACAAGTATGTGAAGTCTGGCCTCGGTTACTGTGATATTGTTGAGGGCTTCGGTGTAGAAGCTCCACTCGGTGAGCTTATCAATGTTCACTATACTGCGAGATTTGCCGATGGAATAGTGTTTGATAGCAGCTACAAACGTGGTAGATCTCTCACCATGCGCATTGGTGTTGGCAAGGTAATCAAGGGACTGGATCAGGGAATTTTAGGGGGTGAAGGAGTACCTCCAATGCGGATAGGTGGTAAACGCAAACTGCAGATTCCTCCACAGTTAGCATATGGCCCTGAACCTGCGGGGTGCTTCTCAGGTGACTGCAACATACCCGCCAATGCCACTCTTCTGTATGATGTTAATTTTGTTGAGCTTTATTCGGAACAGATCGAAGTGAACGAACTCGAAACTGATCAGATACATATATGCATATGA 669 0.4694 MALSLCSGVRVPYCSPSCFWKPNGKNCEAPTKLPCAVHSNKNPLVGMGIGLVTAWVMGLTALDADATRIEYYATVGEPLCEYKYVKSGLGYCDIVEGFGVEAPLGELINVHYTARFADGIVFDSSYKRGRSLTMRIGVGKVIKGLDQGILGGEGVPPMRIGGKRKLQIPPQLAYGPEPAGCFSGDCNIPANATLLYDVNFVELYSEQIEVNELETDQIHICI* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1326 222 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 102 199 IPR001179 GO:0003755
Vra1g1326 222 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 34 206 IPR044183 GO:0009507
Vra1g1326 222 Gene3D - 78 202 IPR046357 GO:0003755
Vra1g1326 222 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 105 204 IPR001179 GO:0003755
Vra1g1326 222 SUPERFAMILY FKBP-like 81 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1326 Vra-Chr1 20678767 20680971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1326 81 205 Calmodulin-binding Proteins AT3G25230 39.370 8.04e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1326 K01802 - gmx:100500547 356.295