Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1301 ATGGTATTCTCTACAGCATATGGGAGAGGTGATGAACTTAGTTGGGGAAGCATCAAAGGGTTTTCATTCCAAGTCCTTACAGGGAGATGGTTCATGATGTTTTCATCATTTATGTTGATGTCAGTGTCGGGAGCAAGCTACATGTTTAGCCTATTCTCACAAGATATCAAGTTAGTTCTTGGTTATGACCAATCCACTCTCAATCTATTAAGCTTCTTCCAGGAGTTGGGAGCCAACATAGGCATTCATGCAGGCCTAATCTATGAGGTCACACCACCTTGGTTTATCTTAGCAATTGGTGGGGTTCTCAACTTTGCTGGGTATTTTCTGATTTGGCTTGTTGTCACCAGCAAAATTGCAAAGCCCCATGTGTGGCAGATGTGCTTCTACCTTTTCATTGGAGCCAATTCTCATTGTGCAACTAACACTGGAGCTCTTGTGACCAGTGTAATGAACTTCCCTATCAGCAGAGGAGTAGTTTTAGGCCTTTTGACTGGCTATACAGGTTTAAGTGCAGTAATAATTACTCAGCTATACTATGCCTTGTATGGAGATGACTCTAAATTCCTCATTTTTCTCATGGCATGGCTACCAATTGCTGCAGTTTTTCTGTTTCTTCCAGTTATCAGAATCCACAAGACTGTTCAACAGCCAAATGACACCAAAGTTTTATACAGGTTCCTCTATCTGACATTAGTCCTTGCAGGGTTTCTCATGTTTGTAACTTTAGTACAACAATTTTTCACTTTCTCTCAGTTTGAGTATCAGATTACTACCACTGTGATGCTTCTTCTGCTCGTCCTTCCACTTTCTGTTGTTATTGTGGAAGAACACAAGATTTGGAAGAGTAAGCTTGAAAACATCAATAGGGAAGATAGTCAGAAGCTCCTGGAAAACTATCCAAACATAGCTACAGAAAATCCTTATCAAGAGAAGTCTTCCCAGGCTCCCCAAGAAGAAATCTCCTTTTGGGAAAACATATTCAACCCCCCAGAAAGAGGTAGCAACGTCACAATGATAAACAACTTGAGTCAAATTGGAATTTCATTGGGATATCCTTCTCATACCGTAACCACATTTGTCTCTCTTACATCCATTTGGATCTATTTAGGTAAGGTGGTTCAAGGGGTTGTCTCAGAGTTTATCATACTCAAATATAGAGTCCCTAGGCCTCTCATGCTCACATCATTGCTTTTGTTATCTTGCGTAGGCCATCTTTTAGTTGCCTTCAATTTCCCAAATGGTCTCTATGTAGCCTCAATTGTTATAGGGTTCTGCTATGGGGCTAATTGGCCATTAATCTATTCTGTTATATCTGAACTTTTTGGCCTCAAACATTATTCAACACTGTACAATTTAGGGTCACTAGCTGGTCCAATTGGGTCATACTTGCTCGGCGTGAGGGTTGCAGGGTATCTGTATGACAAGGAAGCCATGAGGCAAATAGAAGCTATGGGGAAAAAGACAAGTCCAGGAGAGGAATTGAACTGCAATGGGGAGGAGTGCTTCAAGTTAGCATTCATTATAACCACTGCAGTTAGCTTGTTTGGGGCACTTCTGTCACTCATTTTGGTCTTTAGGACTAAACAACTTTACAGAAGTGACCTATACAAGAAATACAAAGAAGCTAAAACTGATGAAACTGAAACAGGTGTGTTACAACAGGATTGA 1671 0.4069 MVFSTAYGRGDELSWGSIKGFSFQVLTGRWFMMFSSFMLMSVSGASYMFSLFSQDIKLVLGYDQSTLNLLSFFQELGANIGIHAGLIYEVTPPWFILAIGGVLNFAGYFLIWLVVTSKIAKPHVWQMCFYLFIGANSHCATNTGALVTSVMNFPISRGVVLGLLTGYTGLSAVIITQLYYALYGDDSKFLIFLMAWLPIAAVFLFLPVIRIHKTVQQPNDTKVLYRFLYLTLVLAGFLMFVTLVQQFFTFSQFEYQITTTVMLLLLVLPLSVVIVEEHKIWKSKLENINREDSQKLLENYPNIATENPYQEKSSQAPQEEISFWENIFNPPERGSNVTMINNLSQIGISLGYPSHTVTTFVSLTSIWIYLGKVVQGVVSEFIILKYRVPRPLMLTSLLLLSCVGHLLVAFNFPNGLYVASIVIGFCYGANWPLIYSVISELFGLKHYSTLYNLGSLAGPIGSYLLGVRVAGYLYDKEAMRQIEAMGKKTSPGEELNCNGEECFKLAFIITTAVSLFGALLSLILVFRTKQLYRSDLYKKYKEAKTDETETGVLQQD* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1301 556 SUPERFAMILY MFS general substrate transporter 335 531 IPR036259 -
Vra1g1301 556 SUPERFAMILY MFS general substrate transporter 31 268 IPR036259 -
Vra1g1301 556 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 339 - -
Vra1g1301 556 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 334 552 - -
Vra1g1301 556 Pfam Nodulin-like 29 274 IPR010658 -
Vra1g1301 556 CDD MFS_Mch1p_like 28 518 - -
Vra1g1301 556 Pfam Major Facilitator Superfamily 345 529 IPR011701 GO:0022857|GO:0055085
Vra1g1301 556 PANTHER MFS TRANSPORTER 334 552 - -
Vra1g1301 556 PANTHER MFS TRANSPORTER 7 339 - -
Vra1g1301 556 Gene3D MFS general substrate transporter like domains 334 533 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1301 Vra-Chr1 19484145 19486512 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1301 16 542 Nodulin-like Gene Family AT2G39210 54.562 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1301 - - vra:106766696 1078.54