Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1289 ATGGCGGCGATTTCTGCTCCTATGGTGGTTACAGCCACAGCGTTGAATGGTGCGCAATTCGGAAATGCCTCTCTGTATGTCGGGGATCTCGACGTCAATGTGATAGAGAGTCAGTTGTTTGATCTGTTCAGCCAAGTGGCTCAAGTGGTTTCGATTAGGGTTTGCAGGGATCAGACTAAGCGAACCTCCCTCGGCTATGCTTATGTCAATTTTGCCAATAATCATGATGCTGCTATTGCCATGGAACATTTGAACTTCACTCCTCTGAATGGAAAACCCATTCGGATTATGTTTTCTCAGCGTGATCCCAGCATCAGGAAAAGCGGACTTGCAAATGTGTTCGTTAAGAATCTTGATGCATCAATAGATAACAAGGCACTGTATGACACTTTTGTTGCCTTTGGAACTGTGCTATCTAGTAAGGTAGCTGTTGATGAGAATGGTCAATCAAAAGGGTATGGATTTGTGCACTTTGACAATGACGAATCTGCCCAGAGTGCTATCAAGAAATTGAACGGCATGTTAATAAATGATAAGAAGGTCTATGTTGGGCTTTTTGTTCGGCGTCAGGAAAGGGCTCCAGGGAATGATGGATCACCAAAGTTCACCAATGTGTATGTGAAAAACTTTTCTGAAACATACACTGATGAAGACCTTAAGCAACTCTTCAATACCTATGGTACTATAACCAGTGCTGTGGTCATGAAAGACGAAGAGGGGAAGTCCAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCCGCTACTGCTGTTGAAAAGTTAAATGGAACAACCATCAACGATGACAAGGTTCTATATGTAGGGAGAGCTCAGAGGAAGGCAGAAAGAGAGGCAGGGTTGAAAGCTAAATTTGAACAGGAAAAAAGAAATAAATTTGATAAACTTCAAGGTGCTAACTTGTATCTGAAAAACTTTGATGACAGTTTTAATGATGAAAAATTGAAAGAGATTTTTTCTAAGTTTGGAACAACAACATCTTGCAAGGTAATGATTGACGCTCTTGGTCGTAGCAAAGGTTGTGGTTTTGTTGCATTCTCTACTCCGGAGGAAGCCGCTAGAGCCTTGAAAGAAATGAATGGGAAGTTAATTGGACAAAAGCCTCTTTATGTTGCAGTAGCCCAGCGAAAGGAAGAAAGGAAGGCTAATTTACAGGCCAAGTTTTCACATATGCAAATTGCTGCTGGTCTTGCTGGATATCATCAAGCTTATTATGGTCCAGGAACAGCTGGGTTTGTCTCACCTCAGGCAACAAGCTTTGGGTTTCAACCTCATGTCTTGCCTCAAAGCCTGCGTGGGGTTGCTCCAAATTTCATTATGCCATACCACTTTCAGAGACAGGGTTCTCCTGGACAAAGGATGGGTCCTACTACACGAAGTGTGGGAAATAACCAGGTAACTCTCAACCATTCACTTCCAATACCACCAACTGGTCCAAATGGCCTAAATAAGTATGTTGTGCCCTATAATCTGGTGGGTCCAGCTGACATTTCTTCTCCTCTTGATGACATCCTTGATGTCAAGCCTTCTGCTACTACACTTGCTTCGGCTTTGGCTTCTGCTAGTCCGGAGGATCAACATAGGATGCTGGGTGAACATTTATATCCACTGGTGGAACGTATTACTCCAAGTAATCAGACTGCAAAAGTCACAGGAATGTTGCTGGAAATGGATCAATCTGAAGTGATTCATCTTATTGAATCTCCAGAGGATTTGAAGATAAAGGTGTTCGAGGCAATGAAGGTGCTTCATGATGCAGTAGAAGGTTCTGAAGAAGTTGGTGATCAACAAAAGTGA 1821 0.425 MAAISAPMVVTATALNGAQFGNASLYVGDLDVNVIESQLFDLFSQVAQVVSIRVCRDQTKRTSLGYAYVNFANNHDAAIAMEHLNFTPLNGKPIRIMFSQRDPSIRKSGLANVFVKNLDASIDNKALYDTFVAFGTVLSSKVAVDENGQSKGYGFVHFDNDESAQSAIKKLNGMLINDKKVYVGLFVRRQERAPGNDGSPKFTNVYVKNFSETYTDEDLKQLFNTYGTITSAVVMKDEEGKSRCFGFVNFESPDSAATAVEKLNGTTINDDKVLYVGRAQRKAEREAGLKAKFEQEKRNKFDKLQGANLYLKNFDDSFNDEKLKEIFSKFGTTTSCKVMIDALGRSKGCGFVAFSTPEEAARALKEMNGKLIGQKPLYVAVAQRKEERKANLQAKFSHMQIAAGLAGYHQAYYGPGTAGFVSPQATSFGFQPHVLPQSLRGVAPNFIMPYHFQRQGSPGQRMGPTTRSVGNNQVTLNHSLPIPPTGPNGLNKYVVPYNLVGPADISSPLDDILDVKPSATTLASALASASPEDQHRMLGEHLYPLVERITPSNQTAKVTGMLLEMDQSEVIHLIESPEDLKIKVFEAMKVLHDAVEGSEEVGDQQK* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1289 606 Gene3D - 188 288 IPR012677 -
Vra1g1289 606 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 23 591 IPR006515 GO:0003723
Vra1g1289 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Vra1g1289 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Vra1g1289 606 PANTHER RNA BINDING PROTEIN 13 597 - -
Vra1g1289 606 Pfam Poly-adenylate binding protein, unique domain 526 591 IPR002004 GO:0003723
Vra1g1289 606 CDD RRM3_I_PABPs 202 282 - -
Vra1g1289 606 SUPERFAMILY RNA-binding domain, RBD 23 191 IPR035979 GO:0003676
Vra1g1289 606 Gene3D - 111 185 IPR012677 -
Vra1g1289 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Vra1g1289 606 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 518 596 IPR002004 GO:0003723
Vra1g1289 606 Gene3D - 289 393 IPR012677 -
Vra1g1289 606 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Vra1g1289 606 SMART poly_2 530 594 IPR002004 GO:0003723
Vra1g1289 606 Gene3D - 16 110 IPR012677 -
Vra1g1289 606 SUPERFAMILY RNA-binding domain, RBD 202 388 IPR035979 GO:0003676
Vra1g1289 606 SMART rrm1_1 24 97 IPR000504 GO:0003723
Vra1g1289 606 SMART rrm1_1 308 380 IPR000504 GO:0003723
Vra1g1289 606 SMART rrm1_1 112 184 IPR000504 GO:0003723
Vra1g1289 606 SMART rrm1_1 204 277 IPR000504 GO:0003723
Vra1g1289 606 SUPERFAMILY PABC (PABP) domain 449 601 IPR036053 GO:0003723
Vra1g1289 606 CDD RRM1_I_PABPs 24 103 - -
Vra1g1289 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Vra1g1289 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Vra1g1289 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Vra1g1289 606 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Vra1g1289 606 PANTHER POLYADENYLATE-BINDING PROTEIN 13 597 - -
Vra1g1289 606 CDD RRM4_I_PABPs 306 384 - -
Vra1g1289 606 Gene3D - 515 596 - -
Vra1g1289 606 SMART rrm2_1 112 184 IPR003954 GO:0003676
Vra1g1289 606 SMART rrm2_1 308 380 IPR003954 GO:0003676
Vra1g1289 606 SMART rrm2_1 24 97 IPR003954 GO:0003676
Vra1g1289 606 SMART rrm2_1 204 276 IPR003954 GO:0003676
Vra1g1289 606 CDD RRM2_I_PABPs 109 184 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1289 Vra-Chr1 19132248 19136806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1289 22 599 Eukaryotic Initiation Factors Gene Family AT1G22760 55.428 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1289 K13126 - gmx:100783163 806.979