Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1286 ATGTCAAGAAGAGGCAGAGTGCTTCTTAGCCTCTCTTTTTCTCTGCTCTCACCGGTAAAGCACAACCCTTTATCAAAATCAACATCACTCACTTCTTTATTACGAAGTAGCATCACATTCTCAACTTCTTCCTCCTCCATAACCCCTCCTATTGAAGAATCAAAGACTTCATCTTCCAAGTCCCAAAGGGATTCACTGATTTTGGAACAGTTCAAGCAAAGAAAACTCAAAGGGTCCCCAAAAGACTCCAAGGGTACCCCTCAAGTGGGTTCAACATCAGTTCCGTTAAGTTCAGATGTTTATACTGAGAAGGCGGTCCAAAAGGGTGTGCAGAATGAGGATGAACCCACCATGGTTATTAGAAGCTTCAAGGAGTTGGGTGTGAGTGAGGAGCTTGTTGAGGTAATGGAGGAGATTGGAGGGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGCTATTTTGGAAGGGAAGAGTTTGTTGCTGAGCTCACCATGCGAACCGGACAGAACTTTGGCCTTCTTGTTGCCCCTTATTCAGTTGCTAAGACGGGATGGAGAGTTGCTTGGTTCAAATTCAAAACATCCACAAGCCATCGTGCTTTGTGCTACGGAGGAGAAAGCTGCACAGTGCTTCAATGCTGCAAAATATATCATCCATAACACAAAAATGAAGTCTGCAAAGGATTGTGCTTCACCAGATAATGGGCAGTCACAAGCCTCAATTGGCCTAATGATAGGAACTACTTGTGAGATTCTTCAATATATTGAAGAGGGGAGCATTGTTCCTTCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCAGACCATTACAAGATCATGAATCAAAATCTGCTGCCAAAAGATTACAAACTATTCTGGCCATTTCAACCATGGCTGAGGTTTTGGGTGAACAATCCCCTATTGTAAAGCATCTTGAGTGCCATCATGCAGGAAATATTTCTGCAATGTCTTTAGAAATGGAAGAAACAGAAGTCTTTCATTTCACAGAGTCTCTTCATGCTCTTCAGAAAAATCTGACAGAGGCCATGGACTCCCTTTTGCAACAAGAATAA 1125 0.4258 MSRRGRVLLSLSFSLLSPVKHNPLSKSTSLTSLLRSSITFSTSSSSITPPIEESKTSSSKSQRDSLILEQFKQRKLKGSPKDSKGTPQVGSTSVPLSSDVYTEKAVQKGVQNEDEPTMVIRSFKELGVSEELVEVMEEIGGFIPSEIQCVVIPAILEGKSLLLSSPCEPDRTLAFLLPLIQLLRRDGELLGSNSKHPQAIVLCATEEKAAQCFNAAKYIIHNTKMKSAKDCASPDNGQSQASIGLMIGTTCEILQYIEEGSIVPSEIRYLVLDEADCMLGSGLGPEIHKILRPLQDHESKSAAKRLQTILAISTMAEVLGEQSPIVKHLECHHAGNISAMSLEMEETEVFHFTESLHALQKNLTEAMDSLLQQE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1286 374 Gene3D - 321 373 - -
Vra1g1286 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 333 IPR014001 -
Vra1g1286 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 8 373 - -
Vra1g1286 374 Pfam DEAD/DEAH box helicase 146 314 IPR011545 GO:0003676|GO:0005524
Vra1g1286 374 SMART ultradead3 140 338 IPR014001 -
Vra1g1286 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 317 IPR027417 -
Vra1g1286 374 Gene3D - 81 320 IPR027417 -
Vra1g1286 374 MobiDBLite consensus disorder prediction 41 96 - -
Vra1g1286 374 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Vra1g1286 374 SUPERFAMILY PABC (PABP) domain 315 369 IPR036053 GO:0003723
Vra1g1286 374 MobiDBLite consensus disorder prediction 67 81 - -
Vra1g1286 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 8 373 - -
Vra1g1286 374 MobiDBLite consensus disorder prediction 41 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1286 Vra-Chr1 19044419 19046920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1286 120 294 Eukaryotic Initiation Factors Gene Family AT3G19760 24.022 5.15e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1286 - - vra:106768009 653.284