Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1285 ATGGAGCCTTCTTCCTCTTCGCTTCAGGTGGAAACAGCAGACCGGAAACAACCTAGTCCGCTCCGAAAAATGTTTGCTGTTTCTTCCCTTGCTGCGGGAATCCAATTTGGTTGGGCTCTTCAACTCTCTCTGTTAACCCCGTACGTTCAGACTTTGGGAGTCCCTCATGCCTGGTCCTCTTTCATTTGGCTCTGTGGCCCCATTTCTGGGTTAGTTGTGCAGCCCATTGTAGGGTATAGCAGTGATAGATGCACTTCCCGATTTGGCCGCCGTCGTCCATTCATTATGAGTGGTGCGCTTGCCGTTGCCATCTCTGTATTTCTCATCGGTTATGCTGCTGATATTGGACATGCCACCGGGGATGATATAACCAGGAAAACGCGTCCACGAGCGGTGGCCATTTTTGTGATTGGCTTTTGGATATTGGATGTTGCTAATAACATGCTTCAGGGTCCATGTCGAGCTTTTCTCGGAGATCTTGCTGCCGGAGATCAGAAAAAGACCAGAACTGCCAATGCATTTTATTCGTTTTTCATGGCCATTGGCAACGTTCTTGGTTATGCCGCTGGCTCCTATGATAAACTTCATCGTCTTTTTCCGTTCACTGAAACCAAGGCGTGTAATGTGTTCTGTGCAAACTTGAAAAGTTGTTTTTTCTTTTCAATACTCCTCCTCCTTGTCCTTTGTATCATTGTTCTCGTTTGCGTGGAGGATCCACAGTTAAAGTTAGATTCTAGCAGGACTAATGATGAAACTGAAGACATGCAAACTGGATTATGGTATTCTTGTTTTGGTGAATTGGGTGCGGCCTTTAAGGGGTTACAAAAACCAATGTTGATGTTGATGCTTGTCACTGCCATTAACTGGGTCGCATGGTTCCCTTATGTGTTGTTCGACACTGATTGGATGGGTCGTGAGGTATATGGTGGTGATGTAGGCAGTCCTGCATACGATGCTGGAGTGCATGCAGGTTCTTTAGGGCTTATGTTGAATTCAATCGTTTTAGCTGTGATGTCATTGGCGGTGGAACCGTTGAGTCGTCTTGTTGGAGGAGTTAAGTGGCTATGGGCAATCGTTAATGTTATCCTCGCAGTTGGCATGGCAATGACGGTGGTGATCACAAATGCTGCACGCAATGAACGGAGGCATGACGGCATCATGGCTGGTCATCCTTCAACTGCTGTTAAAGCTGGTGCATTGAGTTTCTTCTCCGTCCTCGGAATCCCTCTAGCGATTACTTTCAGTGTTCCATTTGCTCTGGCATCTATATACTCGAGCACTTCAGGTGCAGGCCAAGGTTTATCTTTGGGCGTCCTCAATGTTTCAATTGTCGTGCCCCAGATGATAGTATCAGCAATAAGTGGACAATGGGATAAATGGTTTGGTGGTGGTAACTTGCCAGCGTTTGTGTTGGGTGCTGTAGCGGCTGGCGTGAGTGCGGTGTTAGCTGTTATTCTGCTGCCAACTCCGAAGCCAGCAGATGAGAGCAAAACTTCCGTCACAGTGGGGAGTTTCCATTAG 1521 0.4721 MEPSSSSLQVETADRKQPSPLRKMFAVSSLAAGIQFGWALQLSLLTPYVQTLGVPHAWSSFIWLCGPISGLVVQPIVGYSSDRCTSRFGRRRPFIMSGALAVAISVFLIGYAADIGHATGDDITRKTRPRAVAIFVIGFWILDVANNMLQGPCRAFLGDLAAGDQKKTRTANAFYSFFMAIGNVLGYAAGSYDKLHRLFPFTETKACNVFCANLKSCFFFSILLLLVLCIIVLVCVEDPQLKLDSSRTNDETEDMQTGLWYSCFGELGAAFKGLQKPMLMLMLVTAINWVAWFPYVLFDTDWMGREVYGGDVGSPAYDAGVHAGSLGLMLNSIVLAVMSLAVEPLSRLVGGVKWLWAIVNVILAVGMAMTVVITNAARNERRHDGIMAGHPSTAVKAGALSFFSVLGIPLAITFSVPFALASIYSSTSGAGQGLSLGVLNVSIVVPQMIVSAISGQWDKWFGGGNLPAFVLGAVAAGVSAVLAVILLPTPKPADESKTSVTVGSFH* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1285 506 CDD MFS_SLC45_SUC 24 483 - -
Vra1g1285 506 PANTHER SUGAR TRANSPORTER 4 494 - -
Vra1g1285 506 TIGRFAM GPH_sucrose: sucrose/H+ symporter 20 491 IPR005989 GO:0005887|GO:0008515|GO:0015770
Vra1g1285 506 Gene3D MFS general substrate transporter like domains 17 491 IPR036259 -
Vra1g1285 506 Pfam MFS/sugar transport protein 25 291 - -
Vra1g1285 506 SUPERFAMILY MFS general substrate transporter 22 492 IPR036259 -
Vra1g1285 506 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 4 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1285 Vra-Chr1 18990718 18993366 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1285 9 506 Sucrose Transporter Gene Family AT1G71890 61.431 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1285 K15378 - gmx:100782007 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2061 8 38459324 38462192 Vra1g1285 1 18990718 18993366 PCT