Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1283 ATGGAGGAGCAAGTAAAACAAGAACCGAGTCCTCTGAGAAAAATGGTGGCAGTGTCATCCATCGCCGCCGGTATACAATTTGGATGGGCTCTACAACTCTCCCTCCTCACACCATATGTACAAACCCTAGGAGTTCCACACGTTTGGGCTTCCTTCATATGGCTTTGTGGCCCCATCTCTGGCCTCCTAGTTCAACCTATTGTAGGCTACAGCAGTGACCATTGCCAATCTTCCTTTGGCCGTCGCCGTCCATTTATCCTTGCCGGTGCAATAGCTGTCGCAATCGCCATTATCCTTATTGGCTATGCTTCCGATATAGGACACATGGCCGGCGATGACATAACAAAGACAACCCGTCCACGAGCCGTTGCCATCTTCGTCGTCGGCTTTTGGATCTTAGATGTTGCCAACAACATGCTCCAGGGACCATGTCGTGCCTTCCTTGGTGACTTGGCTGCCGGCGATCCAAAAAAAACGAGAACCGCCAACGCATTCTTCTCATTTTTCATGGCCGTGGGCAACGTCCTGGGCTATGCAGCAGGATCCTATAACGATCTCCACAAGATCTTCCCTTTCACTCAAACCGAGGCATGCAACGTATTCTGTGCAAACCTAAAGAGTTGCTTCTTCTTCTCAATCATTCTTCTTCTTGCTTTGTGCATTACCGTTCTCACTTGCGTGAACGACCCTAAGTTCACACCGGCACCTAAGGAGTCGAAGATAGAAGATGGGCAGACACAAGTTTCGTGCTTCTACGGAGAGTGTTGTGTTGCATTCAGAGAACTTGAGAAGCCAATGTGGATGTTGATGCTAGTGACAGCTATCACATGGATTGCGTGGTTCCCTTATGTGTTGTTCGACACTGATTGGATGGGTCGTGAGGTGTACGGCGGTGATGTGGGTCAGAAGGCATACGATAATGGTGTGCATGCTGGTTCTTTGGGGCTCATGTTGAATTCAGTGGTGTTGGCTGTGGCGTCTTTGGGTGTAGAACCATTGGGTCGCTTGGTTGGTGGAGTCAAGTGGTTGTGGGCAATCGTTAATGTTATTCTAGCAATTTGCTTAGCAGCGACTGTGCTTATCACAAGAGTCGCTGAGCGAGAACGTGCCAAAAACCCTGCTCTCATTGGAAACCCTTCCATGGATGTGAAAGTAGGATCCTTAGCATTCTTCTGCGTCCTTGGTATTCCTCTTGCGGTTACATACAGTGTTCCCTTTGCTCTGGCTTCTATCTATTCTAACAGCTCAGGTGCAGGACAAGGATTATCTTTGGGTCTTCTGAATGTTTCAATTGTGATTCCTCAGATGATTGTATCAGCAATCAGTGGACCATGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCATTCGTGTTGGGAGCCGCAGCGGCCGCCATAAGTGCCGTACTTGCAATTGTTATACTTCCAAACCCCAAAAAAGAAGATGAAGCCAAGATGTCCAGCCTCAACATGGGTAGTTTTCATTAA 1488 0.4845 MEEQVKQEPSPLRKMVAVSSIAAGIQFGWALQLSLLTPYVQTLGVPHVWASFIWLCGPISGLLVQPIVGYSSDHCQSSFGRRRPFILAGAIAVAIAIILIGYASDIGHMAGDDITKTTRPRAVAIFVVGFWILDVANNMLQGPCRAFLGDLAAGDPKKTRTANAFFSFFMAVGNVLGYAAGSYNDLHKIFPFTQTEACNVFCANLKSCFFFSIILLLALCITVLTCVNDPKFTPAPKESKIEDGQTQVSCFYGECCVAFRELEKPMWMLMLVTAITWIAWFPYVLFDTDWMGREVYGGDVGQKAYDNGVHAGSLGLMLNSVVLAVASLGVEPLGRLVGGVKWLWAIVNVILAICLAATVLITRVAERERAKNPALIGNPSMDVKVGSLAFFCVLGIPLAVTYSVPFALASIYSNSSGAGQGLSLGLLNVSIVIPQMIVSAISGPWDALFGGGNLPAFVLGAAAAAISAVLAIVILPNPKKEDEAKMSSLNMGSFH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1283 495 PANTHER SUGAR TRANSPORTER 3 483 - -
Vra1g1283 495 Gene3D MFS general substrate transporter like domains 7 476 IPR036259 -
Vra1g1283 495 CDD MFS_SLC45_SUC 15 460 - -
Vra1g1283 495 SUPERFAMILY MFS general substrate transporter 11 482 IPR036259 -
Vra1g1283 495 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 3 483 - -
Vra1g1283 495 Pfam MFS/sugar transport protein 27 278 - -
Vra1g1283 495 TIGRFAM GPH_sucrose: sucrose/H+ symporter 11 480 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1283 Vra-Chr1 18877019 18879136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1283 1 495 Sucrose Transporter Gene Family AT1G22710 61.310 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1283 K15378 - gmx:100785899 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1283 1 18877019 18879136 Vra8g2061 8 38459324 38462192 PCT