Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1276 ATGGCTACATGCTCAAATCATGTGAACGACCTGCCTCACTCCTATGCAAATGGTGATAAGCCTAATCAATCTTTTATGGACAACGAACCTAGGATTAATATGTGTTTTGATTCAATGGAAGATGCAAAGAAATTCTACACAAATTACGCCATTACATGTGGTTTTGCTGTNAGGACAAGATCATCAAAGAAGGATAANGACANTAATGTGTACTATTTGCGATTAGTTTGTTCCAGAGAAGGAAAATATGTATCTTCNATAAAACCAGAGGTGAAAACACATGCAAGTCAAACAAATCAATGTNCAGCTAGCATAACCATTGGAAGGAAGGACAANTATTGGGTTATAAAGAGCGTTGTTTTAGATCACAGTCATGACCTATGCCCTAATACATCTAAGTTGATTCCTGGGAATAGAAAGTTGACCATGCAAGCTAAACACACATTGCAGGTCAATGATGATGNGGGGGTTCGCATTAATAAGAGTTTCCTTAGCATCGTCGGTGATGTTGGTGGATTTGAGAATATGGAATTCGTGGAACGTGATGCAAGGAATTACATTGTGCAACACAGGAGATCTTTATGTAAGGACGGTGATGGTCAAGCACTTCTTAAACTTTTTTCATCCATGAAAGCATTAAACAATGACTTCTTCTACGACATTGCATTGGATGAAAGGAATATAATATGTAGTGTTTTTTGGGCAGATGCAAGAAGTATAGCTGCATGTGCAGAATTTGGTGATGTTGTGTCCTTCGACACCACTTACTTAACNAATAAGTATGACATGCCCTTTGCGCCATTTGTAGGCGTTAACCACCATGGTCACTCAATTTTACTTGGATGTGGATTGCTTTCTTCCGAAGACACTGCGTCCTTTGTGTGGTTGTTTGAATCTTGGTTGAGATGCATGGGAAATAAGGCNCCTGATGGCATTATAACGGATCAATGCAGGGCAATGGCCAATGCCATTGAAGAGGTTTTTCCAAATACAAGACACAAATGGTGTTTATGGCACATGATGAAGAAGTTGCCCGAAAAATTTCAATCCTTCAAAAATTACGTTTCAATTAAAGCAGATATACATGCGCTTATCTATGACTGTGGGTCGCCGACGGACTTTGAGAATGGATGGAAAGAACTTCTTAAAAAACATGCATTGGAGGGGAATGATTGGTTCAGTAATCTTTATGAGGAAAGAAGGAAATGGGTTCCATGTTGTTTAAGGAGTGAATTTTGGGCAGGTATGTCAACAACACAAAGAAGTGAGGGTATGAATGCCTTCTTTGATGGATTTATAAATTCAAGCACCACATTACATCAGTTTGTGGTTCAATTTGACAATGCACTTAGAGTTAAAGCACAAAAAGAAACGCAGGCTGACTTCTCCTCACTAAACACCAGATTGGTTGTGGGTCCCAGTCACCAATAG 1431 0.3899 MATCSNHVNDLPHSYANGDKPNQSFMDNEPRINMCFDSMEDAKKFYTNYAITCGFAVRTRSSKKDXDXNVYYLRLVCSREGKYVSSIKPEVKTHASQTNQCXASITIGRKDXYWVIKSVVLDHSHDLCPNTSKLIPGNRKLTMQAKHTLQVNDDXGVRINKSFLSIVGDVGGFENMEFVERDARNYIVQHRRSLCKDGDGQALLKLFSSMKALNNDFFYDIALDERNIICSVFWADARSIAACAEFGDVVSFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCGLLSSEDTASFVWLFESWLRCMGNKAPDGIITDQCRAMANAIEEVFPNTRHKWCLWHMMKKLPEKFQSFKNYVSIKADIHALIYDCGSPTDFENGWKELLKKHALEGNDWFSNLYEERRKWVPCCLRSEFWAGMSTTQRSEGMNAFFDGFINSSTTLHQFVVQFDNALRVKAQKETQADFSSLNTRLVVGPSHQ* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1276 476 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 468 IPR031052 GO:0006355
Vra1g1276 476 PANTHER OS03G0843700 PROTEIN 13 468 - -
Vra1g1276 476 Pfam FAR1 DNA-binding domain 44 128 IPR004330 -
Vra1g1276 476 Pfam MULE transposase domain 249 343 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1276 Vra-Chr1 18709629 18711059 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra1g1276 MULE 9.8e-35 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1276 - - vra:106760580 838.18