Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1274 ATGGAGGAGCAACAAAAAAGGAAACCTAGTCCCCTCCGAAAAATGGTGGCGGTGTCATCCATCGCTGCCGGTATCCAATTCGGATGGGCCCTACAACTCTCCCTTCTAACACCATATGTACAAACCCTAGGAGTTCCTCATGCTTGGGCCTCCTTCATCTGGCTCTGTGGCCCCATCTCTGGCCTCGTAGTTCAGCCCATTGTAGGCTATTGCAGTGACCATTGCAAGTCTCCTTTCGGTCGTCGTCGTCCCTTTATCCTCGCCGGTGCACTTTTCGTTGCCATCGCCATTATTCTTATTGGCTTCGCTGCCGATATAGGACACTTAGCTGGCGATGACATCACCCAGAAAACCCGTCCACGTGCCGTCGCCATTTTCGTCATTGGCTTCTGGATCTTAGATGTTGCCAATAACATGCTCCAAGGTCCATGTCGCGCCTTCCTTGGTGACTTGGCTGCCGGCGATCAGAAGAAGACGAGAACCGCAAACTCGTTCTACTCCTTTTTCATGGCTGTCGGCAACGTCCTGGGCTATGCCGCAGGATCCTATGACGATCTCCACAAGATCTTCCCTTTCACAGAAACTGAGGCATGCAACGTCTTCTGCGCAAACCTAAAGAGTTGCTTTTTCTTCTCCATCGTTCTTCTTCTTGTTCTATGCATCATCGTTCTCTCTTGCGTGAATGACCCTCAGTTCATTCCGGCATCTGAGGAGATGAAGGATGATGAGGCAGAGAACACTCACCTTTCATGCTTCTGCGGAGAGTTGTGCGTTGCATTCAAGGGACTGAAGAAGCCAATGTGGATGTTGATGCTAGTGACAGCTATCACATGGATTGCGTGGTTTCCTTATGTGTTGTTCGACACTGATTGGATGGGTCGTGAGGTGTACGGCGGTGATGTGGGTCAGAAGGCATACGATAATGGTGTGCATGCTGGTTCTTTGGGGCTCATGTTGAATTCAGTGGTGTTGGCTGTAGCGTCTTTGGGTGTAGAACCATTGGGTCGCTTGGTTGGTGGAGTCAAGTGGTTGTGGGCAATCGTTAATGTTATTCTCGCAGTTTGCATGGCAATGACTGTGCCCATTGCAAAAATCGCTGAGCGTCAACGTGCCCTTAACCCTGCCCTCATTGGAAACCCCTCAATGGATGTCAAAGCTGGATCCTTAGCCTTCTTCTGCGTCCTTGGTATTCCTTTGGCGGTTACGTATAGTGTTCCCTTTGCTTTAGCCTCTATCTACTCTAGCAACACAGGAGCAGGACAAGGACTATCTTTGGGTCTTCTCAATGTTGCAATTGTCGTTCCTCAGATGATTGTATCGGCAATTAGTGGACCATGGGATGCTTGGTTTGGTGGTGGCAACTTGCCGGCGTTCGTGTTGGGTGCGGTGGCGGCTGCCATAGCTGCCATACTGGCAGTTGTTGTACTTCCAAACCCCAAGAAAAAAGATGCAACCAAGATTCCTAGCCTCTCCATGGGAAGCTTCCATTAA 1491 0.5003 MEEQQKRKPSPLRKMVAVSSIAAGIQFGWALQLSLLTPYVQTLGVPHAWASFIWLCGPISGLVVQPIVGYCSDHCKSPFGRRRPFILAGALFVAIAIILIGFAADIGHLAGDDITQKTRPRAVAIFVIGFWILDVANNMLQGPCRAFLGDLAAGDQKKTRTANSFYSFFMAVGNVLGYAAGSYDDLHKIFPFTETEACNVFCANLKSCFFFSIVLLLVLCIIVLSCVNDPQFIPASEEMKDDEAENTHLSCFCGELCVAFKGLKKPMWMLMLVTAITWIAWFPYVLFDTDWMGREVYGGDVGQKAYDNGVHAGSLGLMLNSVVLAVASLGVEPLGRLVGGVKWLWAIVNVILAVCMAMTVPIAKIAERQRALNPALIGNPSMDVKAGSLAFFCVLGIPLAVTYSVPFALASIYSSNTGAGQGLSLGLLNVAIVVPQMIVSAISGPWDAWFGGGNLPAFVLGAVAAAIAAILAVVVLPNPKKKDATKIPSLSMGSFH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1274 496 Gene3D MFS general substrate transporter like domains 7 476 IPR036259 -
Vra1g1274 496 SUPERFAMILY MFS general substrate transporter 1 485 IPR036259 -
Vra1g1274 496 CDD MFS_SLC45_SUC 15 461 - -
Vra1g1274 496 TIGRFAM GPH_sucrose: sucrose/H+ symporter 11 481 IPR005989 GO:0005887|GO:0008515|GO:0015770
Vra1g1274 496 PANTHER SUGAR TRANSPORTER 3 483 - -
Vra1g1274 496 Pfam MFS/sugar transport protein 27 182 - -
Vra1g1274 496 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 3 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1274 Vra-Chr1 18686777 18689069 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1274 2 479 Sucrose Transporter Gene Family AT1G22710 62.062 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1274 K15378 - gmx:100785899 782.326