Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1272 ATGGAGGAGCAAGTAAAACAAGAACCGAGTCCTCTGAGAAAAATGGTGGCAGTGTCATCCATCGCCGCCGGTATACAATTTGGATGGGCTCTACAACTCTCCCTCCTCACACCATATGTACAAACCCTAGGAGTTCCACACGTTTGGGCTTCCTTCATATGGCTTTGTGGCCCCATCTCTGGCCTCCTAGTTCAACCTATTGTAGGCTACAGCAGTGACCATTGCCAATCTTCCTTTGGCCGTCGCCGTCCATTTATCCTTGCCGGTGCAATAGCTGTCGCAATCGCCATTATCCTTATTGGCTATGCTTCCGATATAGGACACATGGCCGGCGATGACATAACAAAGACAACCCGTCCACGAGCCGTTGCCATCTTCGTCGTCGGCTTTTGGATCTTAGATGTTGCCAACAACATGCTCCAGGGACCATGTCGTGCCTTCCTTGGTGACTTGGCTGCCGGCGATCCAAAAAAAACGAGAACCGCCAACGCATTCTTCTCATTTTTCATGGCCGTGGGCAACGTCCTGGGCTATGCAGCAGGATCCTATAACGATCTCCACAAGATCTTCCCTTTCACTCAAACCGAGGCATGCAACGTATTCTGTGCAAACCTAAAGAGTTGCTTCTTCTTCTCAATCATTCTTCTTCTTGCTTTGTGCATTACCGTTCTCACTTGCGTGAACGACCCTAAGTTCACACCGGCACCTAAGGAGTCGAAGATAGAAGATGGGCAGACACAAGTTTCGTGCTTCTACGGAGAGTGTTGTGTTGCATTCAGAGAACTTGAGAAGCCAATGTGGATGTTGATGCTAGTGACAGCTATCACATGGATTGCGTGGTTCCCTTATGTGTTGTTCGACACTGATTGGATGGGTCGTGAGGTGTACGGCGGTGATGTGGGTCAGAAGGCATACGATAATGGTGTGCATGCTGGTTCTTTGGGGCTCATGTTGAATTCAGTGGTGTTGGCTGTGGCGTCTTTGGGTGTAGAACCATTGGGTCGCTTGGTTGGTGGAGTCAAGTGGTTGTGGGCAATCGTTAATGTTATTCTAGCAATTTGCTTAGCAGCGACTGTGCTTATCACAAGAGTCGCTGAGCGAGAACGTGCCAAAAACCCTGCTCTCATTGGAAACCCTTCCATGGATGTGAAAGTAGGATCCTTAGCATTCTTCTGCGTCCTTGGTATTCCTCTTGCGGTTACATACAGTGTTCCCTTTGCTCTGGCTTCTATCTATTCTAACAGCTCAGGTGCAGGACAAGGATTATCTTTGGGTCTTCTGAATGTTTCAATTGTGATTCCTCAGATGATTGTATCAGCAATCAGTGGACCATGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCATTCGTGTTGGGAGCCGCAGCGGCCGCCATAAGTGCCGTACTTGCAATTGTTATACTTCCAAACCCCAAAAAAGAAGATGAAGCCAAGATGTCCAGCCTCAACATGGGTAGTTTTCATTAA 1488 0.4845 MEEQVKQEPSPLRKMVAVSSIAAGIQFGWALQLSLLTPYVQTLGVPHVWASFIWLCGPISGLLVQPIVGYSSDHCQSSFGRRRPFILAGAIAVAIAIILIGYASDIGHMAGDDITKTTRPRAVAIFVVGFWILDVANNMLQGPCRAFLGDLAAGDPKKTRTANAFFSFFMAVGNVLGYAAGSYNDLHKIFPFTQTEACNVFCANLKSCFFFSIILLLALCITVLTCVNDPKFTPAPKESKIEDGQTQVSCFYGECCVAFRELEKPMWMLMLVTAITWIAWFPYVLFDTDWMGREVYGGDVGQKAYDNGVHAGSLGLMLNSVVLAVASLGVEPLGRLVGGVKWLWAIVNVILAICLAATVLITRVAERERAKNPALIGNPSMDVKVGSLAFFCVLGIPLAVTYSVPFALASIYSNSSGAGQGLSLGLLNVSIVIPQMIVSAISGPWDALFGGGNLPAFVLGAAAAAISAVLAIVILPNPKKEDEAKMSSLNMGSFH* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1272 495 PANTHER SUGAR TRANSPORTER 3 483 - -
Vra1g1272 495 Gene3D MFS general substrate transporter like domains 7 476 IPR036259 -
Vra1g1272 495 CDD MFS_SLC45_SUC 15 460 - -
Vra1g1272 495 SUPERFAMILY MFS general substrate transporter 11 482 IPR036259 -
Vra1g1272 495 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 3 483 - -
Vra1g1272 495 Pfam MFS/sugar transport protein 27 278 - -
Vra1g1272 495 TIGRFAM GPH_sucrose: sucrose/H+ symporter 11 480 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1272 Vra-Chr1 18625992 18628109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1272 1 495 Sucrose Transporter Gene Family AT1G22710 61.310 0.0 631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1272 K15378 - gmx:100785899 783.867