Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1271 ATGGAGGCACCATCTCCGACCAAACCCATTGACCCAACAAAGCCTTCCATCACCACCCTCAGTGTGGAAGCCAGCCAGGCCGAGCCAAGCCCACTCAGAAAAATGTTTGCTGTGGCGTCCATAGCCGCGGGCATACAGTTCGGGTGGGCTCTTCAGCTTTCTCTGCTGACCCCTTACGTTCAGCTCTTAGGAGTTCCACATGCCGCAGCCTCCTTCATCTGGCTCTGCGGCCCCATCTCCGGACTTGTGGTGCAGCCCATTGTGGGCTACTACAGCGACAGAAGCACTTCTCGCTTCGGTCGCAGACGCCCCTTTATTCTCGGAGGTGCAGTGGCTGTCGCCATAGCTGTATTTCTTATCGGTTATGCAGCCGATATAGGGTACTCAGCTGGCGACGACATAACCAAAAAAACCCGACCTCGGGCCGTTGGAGTGTTCGTCATAGGATTTTGGATCCTAGATGTTGCAAACAACATGTTACAAGGTCCTTGCCGTGCCTTTCTAGCTGACTTAGCGGCAGGGGACCAGAGAAAAACCAGAATAGCAAATGGGTTTTTCTCGTTCTTCATGGCCGTCGGCAACGTCTTGGGATATGCAGCGGGGTCTTTTAGTGCTCTGCACAAGATTTTTCCCTTCACAGAGACTAAGGCGTGCGATGTTTTCTGTGCCAATCTGAAAAGTTGTTTCTTTTTCTCGATCTTGTTACTGCTGTTCTTGGCCACGGTAGCTCTCATTTACGTAAAGGACAAGCCCGTGCCGCCACGGGCGGTGCAAGAGGATGCGCAGCCCTCGTGCTTCTTTCAGCTCTTCGGCGCGTTGAAGGAGCTGAAAAGACCCATGTGGATGCTCATGTTGGTGACAGCTATCAACTGGGTCGGGTGGTTCCCCTACTTCCTGTTCGACACCGACTGGATGGGTCGCGAGGTGTACGGCGGAACGGTGGGCGAGGACGCGTACGCGAAGGGGGTGCGCGTGGGGTCTCTGGGACTCATGATAAACGCCGTCGTTTTGGGATTCATGTCGCTGGCGGTTGAACCATTGGGGCGCATGGTTGGGGGAGTGAAGAGGCTGTGGGGCATCGTGAACTTCATTCTCGCGATTGGGTTCGGAATGACCATCGTTATAACCAAGGTGGCGGAGCACGAGCGCCACTTGAACCCCGCCGCAGTGGGCCACCCCTCCAGCGGCGTCACAGTTGGGTCCATGGTTTTCTTCGCCGTTCTCGGAGTTCCCCTTGCGATTACTTTCAGTGTTCCTTTTGCTCTTGCATCAATATACTCCAGTGCTTCGGGAGCAGGGCAAGGTTTATCATTGGGAGTCCTGAATCTTGCAATTGTGGTACCACAGATGGTGGTGTCTGCATTGAGTGGTCCTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTAGGAGCGGCCGCGGCGGCGCTGAGCGCCATAATGGCGATTGTGTTGCTGCCAACTCCAAAACCAGCTGATGAGGCGAAGGCCGCAAGCATGGTTGGAGGGGGCTTTCACTAG 1530 0.5503 MEAPSPTKPIDPTKPSITTLSVEASQAEPSPLRKMFAVASIAAGIQFGWALQLSLLTPYVQLLGVPHAAASFIWLCGPISGLVVQPIVGYYSDRSTSRFGRRRPFILGGAVAVAIAVFLIGYAADIGYSAGDDITKKTRPRAVGVFVIGFWILDVANNMLQGPCRAFLADLAAGDQRKTRIANGFFSFFMAVGNVLGYAAGSFSALHKIFPFTETKACDVFCANLKSCFFFSILLLLFLATVALIYVKDKPVPPRAVQEDAQPSCFFQLFGALKELKRPMWMLMLVTAINWVGWFPYFLFDTDWMGREVYGGTVGEDAYAKGVRVGSLGLMINAVVLGFMSLAVEPLGRMVGGVKRLWGIVNFILAIGFGMTIVITKVAEHERHLNPAAVGHPSSGVTVGSMVFFAVLGVPLAITFSVPFALASIYSSASGAGQGLSLGVLNLAIVVPQMVVSALSGPWDALFGGGNLPAFMVGAAAAALSAIMAIVLLPTPKPADEAKAASMVGGGFH* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1271 509 PANTHER SUGAR TRANSPORTER 24 496 - -
Vra1g1271 509 Gene3D MFS general substrate transporter like domains 27 489 IPR036259 -
Vra1g1271 509 SUPERFAMILY MFS general substrate transporter 33 494 IPR036259 -
Vra1g1271 509 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 24 496 - -
Vra1g1271 509 Pfam MFS/sugar transport protein 35 294 - -
Vra1g1271 509 CDD MFS_SLC45_SUC 35 472 - -
Vra1g1271 509 TIGRFAM GPH_sucrose: sucrose/H+ symporter 31 493 IPR005989 GO:0005887|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1271 Vra-Chr1 18580408 18583441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1271 7 509 Sucrose Transporter Gene Family AT1G22710 62.378 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1271 K15378 - gmx:100786411 900.582