Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1264 ATGATGTCTGAAGAGTCACTGAGTATTGTGGTGATCCACTATGCATCAAGAGACTTCAACACAAGGGCCATAAAAGTGGTCATGCAGGGATTTTCACTTGGTCGTGGAGACAAGCTTACACTTCTTGTAATTCTTCGCCAAGCTCATAGTCCCAGTAGGCTTCCCTTCATTGCACCTGCAAAATTGCTTGGATTATTTGAGACTGATCACAAAATTGTTGAGGAAGAAGTTGCTAAGAAGAAAGAAGAGCTTCTTAATAATGCAAGCTTAAGGGAGATTTCTGAGCTGTGTGAAGCAGACAGGATCCAATTCCGGGTAGAAGTTCTGCAGGGTAAATTACCAGAGGTTGCTGTAAATGCTGCCATCCGTCTGGAGGCAACATCAGTGATAATTGATAGACAGATGAAGAAATATAAAAAGGAATTCAAGCAGAGTCTCTTTTGTTCTTTGCTAATAATGAAACGTGACAACTCTGTGCAACACTTGAGAGGGCCAAGGGAAACACATCTGTGTGATGGAAGCAATGGAAATGCAAGATGTGTTAGATGTCCTATATCTAAATCTCCCCGAAGAGTACGGCAAGTGACAAATTCCTGCTCCAATACCAGCTCTTCATTTCCTACTCTTGCAAAGGGTGGTTGCCCCCAACCCCAATTTTATTCTCAAATAAAACAAATCCCTGAAAATAGAGTAGAAGACATGGAAAGAGGGTATTGCCTACTATCCATTACTGATACTCAAAAAACTAATCATACTGAAGAGTATTACATAGAAACACCAGCAGAACATAGCAACAACCCTGAAGCATATCAAATAGTTGAACAATTCAAAAATTCTGTTTGCTCAGTATGCAAGAACAGAAGACCAAAATTTGAAGTGATGAAAGAATTCACATATGCAGAGCTGCATGAAGCTACACAAGGTTTTTCACCAAAAAACTATTTGTCCGAAGGAGGATTTGGTTCTGTCTACAAAGGAAGGCTGCAAGGAGGACTAAGGATTGCTGTTAAGCAACATAAATGTGCAAGCCTCCAAGGAGAGAAGGAATTCAAATCTGAGGTCAATGCACTCAGCAGAGCTATACATGAGAATGTGGTCATGCTGCGTGGATCTTGTTCAGAAGGAAATAACCGGCTTCTTGTGTATGAATTTATTTGCAATGGCTCTCTTGACCAACATTTATCACAACACTCACGTAGGCCACTTACTTGGAAAGAAAGGATCAAAGTAGCTATTGGAGCTGCAAGAGGCTTGTTGTACTTGCATCAGAACAATATAATACACCGAGATATGAGGCCTAGCAACATCCTTGTTACACATGATTATGAAGCAATGCTTGGAGATTTTGGTCTGGCTAGAACTGAACAAATGGACTCCTTATACTCCACAGATGTTGTTGGAACTATAGGGTATTTGGCACCAGAATATGCAGAGTCAGGAAAACTGTCAACCAAGACAGATGTGTATGCTTTCGGTGTGGTTCTTCTTCAGCTAATAACTGGAATGAGGACTGCAGACAAACGTCTTGGGGAAAAAAGTCTTGTGGGATGGGCTAGGCCACTACTCAAAGAAAGGAACTATCCAGATCTAATTGATGAAAGGATGTTGGATAATCACGATTGCCATCAGCTTTTCTGGATGATTCGTCTGGCAGAAAAATGCCTCAGCAGGGATTCTCAGAGGCGATTATCAATGGATACAGTGGTGAATGCCTTAACTCATATACTGGAAGGCAACACATGCAGTGTTGTTCTAAGAGATTGCTCTCCAGCACAATCAGATTCATCATATGACATGTCAGACTTGCTTATCTCAGATACCTCTCAGGAGATAGTATGTGAAGATACAAGCAACTATGCAGGATATGCTTCTATGTGCTTCAGACCACCACCATCTCCTCCACTAGGAAGCACTTCCTCAAGTACATCAAGCGTGTTCACAGGGCTGAGTGAATCTCCTATAGATGATTTGTCCAATAATAAGAATAAGGGTAAAAGGGCAAATGAACAAGGTGGGATACTCTAA 2025 0.4128 MMSEESLSIVVIHYASRDFNTRAIKVVMQGFSLGRGDKLTLLVILRQAHSPSRLPFIAPAKLLGLFETDHKIVEEEVAKKKEELLNNASLREISELCEADRIQFRVEVLQGKLPEVAVNAAIRLEATSVIIDRQMKKYKKEFKQSLFCSLLIMKRDNSVQHLRGPRETHLCDGSNGNARCVRCPISKSPRRVRQVTNSCSNTSSSFPTLAKGGCPQPQFYSQIKQIPENRVEDMERGYCLLSITDTQKTNHTEEYYIETPAEHSNNPEAYQIVEQFKNSVCSVCKNRRPKFEVMKEFTYAELHEATQGFSPKNYLSEGGFGSVYKGRLQGGLRIAVKQHKCASLQGEKEFKSEVNALSRAIHENVVMLRGSCSEGNNRLLVYEFICNGSLDQHLSQHSRRPLTWKERIKVAIGAARGLLYLHQNNIIHRDMRPSNILVTHDYEAMLGDFGLARTEQMDSLYSTDVVGTIGYLAPEYAESGKLSTKTDVYAFGVVLLQLITGMRTADKRLGEKSLVGWARPLLKERNYPDLIDERMLDNHDCHQLFWMIRLAEKCLSRDSQRRLSMDTVVNALTHILEGNTCSVVLRDCSPAQSDSSYDMSDLLISDTSQEIVCEDTSNYAGYASMCFRPPPSPPLGSTSSSTSSVFTGLSESPIDDLSNNKNKGKRANEQGGIL* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1264 674 ProSiteProfiles Protein kinase domain profile. 309 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g1264 674 MobiDBLite consensus disorder prediction 637 657 - -
Vra1g1264 674 Pfam Protein tyrosine and serine/threonine kinase 313 572 IPR001245 GO:0004672|GO:0006468
Vra1g1264 674 ProSitePatterns Tyrosine protein kinases specific active-site signature. 426 438 IPR008266 GO:0004672|GO:0006468
Vra1g1264 674 Gene3D Phosphorylase Kinase; domain 1 271 384 - -
Vra1g1264 674 PANTHER OS01G0253100 PROTEIN 8 643 IPR045271 GO:0004714|GO:0006468
Vra1g1264 674 SUPERFAMILY Protein kinase-like (PK-like) 294 591 IPR011009 -
Vra1g1264 674 Gene3D Transferase(Phosphotransferase) domain 1 385 588 - -
Vra1g1264 674 PANTHER TYROSINE KINASE FAMILY PROTEIN 8 643 - -
Vra1g1264 674 MobiDBLite consensus disorder prediction 632 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1264 Vra-Chr1 18100994 18106339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1264 297 593 Trihelix Transcription Factor Family AT5G38560 45.955 5.92e-81 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra1g1264 PK_Tyr_Ser-Thr 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1264 - - vra:106758544 1310.82