Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1263 ATGGGACGAGTGAATAATGAAATTGAGGATGAAGTGCTTCCCAGTGATATGAGTGCAGCACAGTCGAATGGTGAGAGTTATGAAGGAAGTACCAGCGTTGTTCTGAAGAAAGGGCCGTGGACATCAACTGAAGATGATATTTTGGTGGATTATGTCAACAAAAATGGGGAGGGGAATTGGAATGCAGTTCAGAAGCACACAGGGTTATTACGTTGTGGAAAAAGTTGTCGGCTGCGATGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCATTTACTGCAGAAGAGGAGCGGTTCATTGCTGAACTTCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACATTTGCCTGGTCGCACCGATAATGAGATTAAGAATTATTGGAACACCCGGATCAAGAGGCGTCAGCGGGCTGGGTTGCCACTTTACCCTCCAGAAGTATCTTTGCAAGGATTTCAAGAGAGTCAGCGTAACCAAAGCAATGGTGGACTTAATGGTGGCAATAGAATGCATCTTGATATGTTGCAGAAAAATAGTTATGAGATACATGGTGGTATATTTGATAGTCTGAAGGATAATCAGGGAATCTTACCTTATGCACCTAAGTTTTCCGATGTTTCTGTTTGTGGCAATATGCTGAAAGGTCTTGATTCTTCTTCTCAATATTGTAGCATTATGCCACCAGCATCACCTAAGAACAAGCGTCTTAGAGAGTCAACAATACAGTTTACTGGTTCCAAGGATAAGAAAAACAATGGTCTATATCCATTATGTCAAAATCGGGACAATAATTCTGATAAGATTGCACACTCATTTGGAATGCAAGCACTCCTTGATCCTGGTCCATCCTCACACAACTCAATGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCAACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAACTTCATTTAGGTAGCTGGGGTACATCTCCCCCGCCTCCTATGCTCGAGTCAGTCGATGATTTCTTTCAGTCTCATACACCAATTAGTACACTCGAGTCAGATTGTTCTTCTCCACAAAATAGTGGCCTGCTGGATGCCTTACTTTATCAGGCAAAGACTCTGAGCAGTTCAAGGAACCATTGTTCTGACAAAGGTTCAAATTCTTCTACTGCAACCCCTGGTGACAGAGGTGACAACTCTGCTTTGAATGTATACGAGACAGAATGGGAAGATTACGCTGACCCTGTATCTCCCTTTGGTGCGACTTCAATATTGAATGAGTGCCCTGCTCTTATAGGCAGTGAGAATTCATTGGACGAACAGCTATCTCTCCAGACATTTACTGGCAACATTCCAAAATTAGAGTTTGTTGATCAGGTTTGGACTCCTGACAGTGAAAATCAAACCTTGTCCTTCTTGAATTTCACTCGTCCAGACTTATTGTTTGCTTCAGATTGGCATGAGCTAGGTTTTGGGCATGGCAAGAACCAGGCCATCACAACTGATACAACAACTACCCTTCTTGGAGACGATTTTGTCGCTGACCATAAGCATATGACTTCTGGAACTTCTCAGTCAAGTCAGGTGTGGGGTTTTGGTTCTTGTGCATCGGCAGCCAATAATATGCATGCCCTCTGTCACCTATCCGATCTTGGTTAA 1668 0.4335 MGRVNNEIEDEVLPSDMSAAQSNGESYEGSTSVVLKKGPWTSTEDDILVDYVNKNGEGNWNAVQKHTGLLRCGKSCRLRWANHLRPNLKKGAFTAEEERFIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVSLQGFQESQRNQSNGGLNGGNRMHLDMLQKNSYEIHGGIFDSLKDNQGILPYAPKFSDVSVCGNMLKGLDSSSQYCSIMPPASPKNKRLRESTIQFTGSKDKKNNGLYPLCQNRDNNSDKIAHSFGMQALLDPGPSSHNSMCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPELHLGSWGTSPPPPMLESVDDFFQSHTPISTLESDCSSPQNSGLLDALLYQAKTLSSSRNHCSDKGSNSSTATPGDRGDNSALNVYETEWEDYADPVSPFGATSILNECPALIGSENSLDEQLSLQTFTGNIPKLEFVDQVWTPDSENQTLSFLNFTRPDLLFASDWHELGFGHGKNQAITTDTTTTLLGDDFVADHKHMTSGTSQSSQVWGFGSCASAANNMHALCHLSDLG* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1263 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Vra1g1263 555 MobiDBLite consensus disorder prediction 380 403 - -
Vra1g1263 555 CDD SANT 39 84 IPR001005 -
Vra1g1263 555 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 551 - -
Vra1g1263 555 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Vra1g1263 555 MobiDBLite consensus disorder prediction 380 400 - -
Vra1g1263 555 CDD SANT 92 133 IPR001005 -
Vra1g1263 555 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 551 - -
Vra1g1263 555 SMART sant 36 86 IPR001005 -
Vra1g1263 555 SMART sant 89 137 IPR001005 -
Vra1g1263 555 MobiDBLite consensus disorder prediction 16 31 - -
Vra1g1263 555 MobiDBLite consensus disorder prediction 1 31 - -
Vra1g1263 555 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Vra1g1263 555 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Vra1g1263 555 SUPERFAMILY Homeodomain-like 36 131 IPR009057 -
Vra1g1263 555 Gene3D - 36 89 - -
Vra1g1263 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Vra1g1263 555 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Vra1g1263 555 Gene3D - 92 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1263 Vra-Chr1 18038311 18043311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1263 22 537 MYB Transcription Factor Family AT3G11440 43.818 5.95e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g1263 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1263 K09422 - gmx:100785877 848.966