Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1261 ATGTACTATCAGCAGCAGCAGCAGCAGATAGCAGCAAGAAACTTGCATGCTTTAAGGATGCACAGCCACACTGAGAGGCATATGATGATGCAAGGAGGCAATGGGGCTTGTGATTCAGGACTTGTTCTTTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGCCAACAATAAAATTGAAGCAACAAGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATTAATGATGCCTTACAGATGCAAATCGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGCAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATTTAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAAGTCTTGACACTAAATTTTCAGAACTGAAAGAGCTACAGGTTCTGTGGCCTCAGCAAACACAAGATGGCCAAGCCACTGAGTGTTCAATGGGGAGTTTCTTAACCTATAGTGAGGAATCTCAAAGAGACAGAGAAACACATAATATGAGCCTGAATCTGATAGCCTTCAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCATTTGAAGCCTGATCTCACATTGAGTGAAGATGTGAAGCAGAATATGATGTTTCTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTTTTACAAGAAGGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTCTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAAAGGAAGAAGGGTGGAAAGTAAGAGACAGCACTGAAACTGGGAGAATGGCAGTTAAATTGAACCATGAGAAGATTTCTCCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG 1248 0.4111 MYYQQQQQQIAARNLHALRMHSHTERHMMMQGGNGACDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTANNKIEATSRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVLWPQQTQDGQATECSMGSFLTYSEESQRDRETHNMSLNLIAFNGPPFSVSKDCVEESMHLKPDLTLSEDVKQNMMFLSSSSDGKVVKGDFLQEGPSSLLSMNVGVLEEEKFGRTTLSKEEGWKVRDSTETGRMAVKLNHEKISPDYRLPNFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1261 415 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Vra1g1261 415 Gene3D - 47 105 - -
Vra1g1261 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Vra1g1261 415 Pfam MYB-CC type transfactor, LHEQLE motif 145 192 IPR025756 -
Vra1g1261 415 Coils Coil 147 167 - -
Vra1g1261 415 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Vra1g1261 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 414 IPR044848 GO:0003700
Vra1g1261 415 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 7 414 - -
Vra1g1261 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1261 Vra-Chr1 17944874 17948114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1261 80 414 G2-like Transcription Factor Family AT3G04030 48.235 6.93e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra1g1261 Myb_DNA-binding 4.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1261 - - gmx:100786282 724.546