Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1258 ATGATGGAAGAACCTGTTGTGGTTAACAAAGGAGATGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACATGTTACCTCACAGAGAAAGTGCTGGATAGAGGCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTGAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTCTGCCAAAGGGATAGGAAGTATCCAACAGGGTTGAGAACCAATAGAGCAACACAATCTGGGTATTGGAAGGCCACTGGGAAGGACAAAGAGATTTTCAAAGGGAAGAACAATCTTGTGGGGATGAAGAAGACCCTTGTCTTCTATAGAGGAAGAGCCCCAAAGGGAGAGAAAACAAATTGGGTTATGCACGAATTCAGATTGGAAGGAAAATTCGCATGTTACAACCTTCCCAAGGCTGCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCATAAGAGCAACACTGATGTTAACAAAAGGGTACTCCCAATTAACCCTGGCATTGGCCTTCTGAGAATGAACTCAATAGGAGAAGATCTATTTGATTTCTCTTCACTTCCACCTCTTGTGGATCCTCTCTTTGATCAAACCTCACACAACAAACACATTGACAATGATTTCAAGGGTACTACTAATAGTACTAACACTTACAAACATTCATCAGCTTCATCAGCAGCAGCGGCTGAACCACCCTATTACCTTCCCAATTTCATCAACAACAATCATCACATGCAGATGATGATGATGATGAAGCCTGAAGAACACAGAATCTCTGAGACACCTCTCACCAACGTTAACTATGCCTCCACCAGCCAAGGGAATTTCAACTCTAACAACAACCCGATGGGAATTGGCACAAGCAATCATAATCCCCTTCAAAACACAATCTCACCCTTCAACGTGTTCCAAGATTACTATATTCACCAAGGCAAAAACAGTTTCCAGCAGTGCAAGAAGGAGCAATTCTCCAACACTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAACGACAGAAACACTGACACTTCCTCGGTGGTGTCAAAGCAAGACAACATGGGAAGGAACAAGGCATTGTACGAGGATCTTGATCAAGCTCCTTCATCAGTTGCTACCCTCTCAGATTTGGATTGCCTCTGGGATGATTACTGA 1200 0.4425 MMEEPVVVNKGDEPLDLPPGFRFHPTDEEIITCYLTEKVLDRGFSATAIGEADLNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGLRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFACYNLPKAAKDEWVVCKVFHKSNTDVNKRVLPINPGIGLLRMNSIGEDLFDFSSLPPLVDPLFDQTSHNKHIDNDFKGTTNSTNTYKHSSASSAAAAEPPYYLPNFINNNHHMQMMMMMKPEEHRISETPLTNVNYASTSQGNFNSNNNPMGIGTSNHNPLQNTISPFNVFQDYYIHQGKNSFQQCKKEQFSNTVVSASQDTCLSNDRNTDTSSVVSKQDNMGRNKALYEDLDQAPSSVATLSDLDCLWDDY* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1258 399 Gene3D NAC domain 26 173 IPR036093 GO:0003677|GO:0006355
Vra1g1258 399 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 8 348 - -
Vra1g1258 399 SUPERFAMILY NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Vra1g1258 399 ProSiteProfiles NAC domain profile. 17 168 IPR003441 GO:0003677|GO:0006355
Vra1g1258 399 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Vra1g1258 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1258 Vra-Chr1 17862993 17865219 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1258 1 210 NAC Transcription Factor Family AT5G18270 73.709 1.18e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g1258 NAM 1.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1258 - - gmx:100813376 591.652