Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1254 ATGGGAACCCCACAATCCAACAACTTGCCCCCAGGGTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTTAGGAAAAAGGTTGCCTCCATTCCTTTGCCAGTTTCCATCATTGCTGAGGTTGATATCTACAAGTGTGATCCGTGGGAGCTACCAGCTAAGGCTGCGTTTGGGGAGAAAGAGTGGTACTTTTTCAGTCCGAGAGACCGGAAGTACCCAAATGGAGCTCGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAAGCAACAGGCACTGATAAGAACATAGTCGCATCATTGGGTGGAGGAGTGAGAGAACATTTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAAACCCCCAAAGGGTGTTAAGACCAATTGGATCATGCATGAATATCGCCTTGTTGATACCAATAAACCTGTTCGGATCAAAGACACTTCCATGAGATTGGATGACTGGGTTCTATGCCGGATATACAAGAAGTCGAAACACAGTCTAAGTTCAATCACAGAGGCAGCTTTTACAGTGGAAATGAAAGAGCAAGAAGAAGCAGAAGAAGAAGAGCAAATGAAAGAAAGGTTTTCTTTTTCAGCAATCTCCAACACTACAACAGCTCTTCTCCCTCCTCCACAAGCCACACTCATATCTCAAAAATCTCTATCCTTCTCCAACCTCTTGGATGCAACAGACTTTTCCATGCTCAGCACCATCTTATCTGAGAACCATAACTCCACTAATTACCAAAACACAACCGAAACCTTGTTCAACTCTCAGAATATGGATCCTGAAACCCCCCAAAATTTCTACAACAACAGCACTCATATTAACAATAGTACCTGTTTCATTCAGAAGAACCCTTCAGTGATTTCCCACATGGATGAGAACATGATGTACCCTCCAAAGAAACACCATAGTTCCTCCTGCCATTTTCCTAACACCACCCTCCAAAACCAGAACCCCCAATGGAACTTCATCTTCAAGCAGCCTCACATCAATCACCAGCTACTTCCGGGTCCCCAAAATCTTCAATTTCAGTGA 1053 0.4444 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLGGGVREHFGVKKALVFYKGKPPKGVKTNWIMHEYRLVDTNKPVRIKDTSMRLDDWVLCRIYKKSKHSLSSITEAAFTVEMKEQEEAEEEEQMKERFSFSAISNTTTALLPPPQATLISQKSLSFSNLLDATDFSMLSTILSENHNSTNYQNTTETLFNSQNMDPETPQNFYNNSTHINNSTCFIQKNPSVISHMDENMMYPPKKHHSSSCHFPNTTLQNQNPQWNFIFKQPHINHQLLPGPQNLQFQ* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1254 350 SUPERFAMILY NAC domain 6 166 IPR036093 GO:0003677|GO:0006355
Vra1g1254 350 ProSiteProfiles NAC domain profile. 9 166 IPR003441 GO:0003677|GO:0006355
Vra1g1254 350 PANTHER NAC TRANSCRIPTION FACTOR 56 5 315 - -
Vra1g1254 350 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Vra1g1254 350 PANTHER OS01G0104200 PROTEIN 5 315 - -
Vra1g1254 350 Gene3D NAC domain 18 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1254 Vra-Chr1 17644260 17646906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1254 7 245 NAC Transcription Factor Family AT3G04070 63.223 1.97e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g1254 NAM 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1254 - - gmx:100817074 515.768