Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1252 ATGATCAAGCGCTCCGGGCGGCAGCCGCCGCCGGAGTCGCTTGCAGACAAGATCTACAACCTCCGGGGAGCGTTTCTCATGGTAGCGGTTCCGCTCCTCCTCGTCGCCCTCGTGCTCTACGCCATGCCTTCCGCCTCCTCCAACGAGTCCATCGAAGACTACGCCCTAACGCACCGCAAGGCTGCCCCCGATCGGAAAACTGCCTTCGCTGTCATCTTCGATGCCGGTAGCTCCGGCAGCCGTGTCCACGTCTTCCGTTTCGACCAGAACTTGGATCTCGTTCCCATCGGGAATGACCTCGAGCTTTTCGTCCAGATTAAACCTGGTTTGAGTGCTTATGCACAGAATCCACAACAGGCAGCTGAATCTTTGATTACACTATTGGATAAAGCTGAGAGTGTTGTTCCTCAGGAGTTTCGGCCTAAGACACCTGTCAGAGTTGGGGCAACTGCAGGGTTGAGGGCTTTGGAAGGGGATGCTTCTGACAGGATTTTGCAAGCGGTTCGGAATTTGCTTAAGCAAAGAAGCACTCTAAAATCTGAGTCTGATTCGGTAAGAGTGCTGGATGGAACACAAGAAGGTGCTTTTCAATGGGTGACTATCAACTATCTACTGGGAAACCTAGGAAGAGATTATTCAGAGACAGTTGGGGTAGTTGATCTTGGAGGTGGATCTGTTCAGATGGCATATGCCATCTCAGAGACAGATGCTACCGGGGCTCCAACTGTATCAGTTGGAGAGGACCAATATGTCAAGAAGATGTTCCTTAGGGGAAGGAAATATTACCTCTATGTTCACAGTTACTTGGGCTATGGTTTACTAGCAGCTCGTGCGAAGATTTTAAAGGTTTCGGATGATTTTGGAAACCCTTGCATCTTAGATGGCTTTAACGGATCTTACAAATATGGAGGAAAGTCGTTTAAGGCTTCATCCTATCCTTCTGGTGCAAGCTTGAATGAATGCAAAAGCATAGCTCTTAAGGCTCTCAAGGTTAAGGAGTCAAAATGCACACATATGAAGTGCACTTTTGGTGGGATATGGAATGGTGGTGGCGGTGATGGACAGAAAAATCTTTTTGTTGCCTCATTTTTCTTTGACCGGGCAGCTGAGGCTGGTTTTGCCGACCCAAACTCACCCGTTGTGAAGGTTCGTCCCGTGGATTTCGAGGCTGCATCTAAGCAAGCTTGTCGAACAAAGATTGAAGATGTCAAATCCTTTTATCCACTTGTTGAGGAAGGGAACCGTCCATATTTATGCATGGATCTCTTATACCAATATACATTGCTTGTTGCTGGATTCGGCCTAGATCCATGGCAACAGATGACGTTAGTGAAGAAAGTTAAATACCATGATGCTCTTGTTGAGGCTGCATGGCCCTTAGGCAGCGCCATAGAAGCTGTATCATCTACATAA 1413 0.4805 MIKRSGRQPPPESLADKIYNLRGAFLMVAVPLLLVALVLYAMPSASSNESIEDYALTHRKAAPDRKTAFAVIFDAGSSGSRVHVFRFDQNLDLVPIGNDLELFVQIKPGLSAYAQNPQQAAESLITLLDKAESVVPQEFRPKTPVRVGATAGLRALEGDASDRILQAVRNLLKQRSTLKSESDSVRVLDGTQEGAFQWVTINYLLGNLGRDYSETVGVVDLGGGSVQMAYAISETDATGAPTVSVGEDQYVKKMFLRGRKYYLYVHSYLGYGLLAARAKILKVSDDFGNPCILDGFNGSYKYGGKSFKASSYPSGASLNECKSIALKALKVKESKCTHMKCTFGGIWNGGGGDGQKNLFVASFFFDRAAEAGFADPNSPVVKVRPVDFEAASKQACRTKIEDVKSFYPLVEEGNRPYLCMDLLYQYTLLVAGFGLDPWQQMTLVKKVKYHDALVEAAWPLGSAIEAVSST* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1252 470 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 1 470 IPR000407 GO:0016787
Vra1g1252 470 CDD NBD_sugar-kinase_HSP70_actin 71 230 - -
Vra1g1252 470 PANTHER APYRASE-LIKE PROTEIN 1 470 - -
Vra1g1252 470 Gene3D - 69 464 - -
Vra1g1252 470 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 188 203 IPR000407 GO:0016787
Vra1g1252 470 Gene3D Exopolyphosphatase. Domain 2 189 448 - -
Vra1g1252 470 Pfam GDA1/CD39 (nucleoside phosphatase) family 65 469 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1252 Vra-Chr1 17566446 17578403 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1252 12 469 Calmodulin-binding Proteins AT3G04080 67.609 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1252 K14641 - gmx:100804818 796.578