Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g1248 ATGGTTAGTGCAATAAAAGCAGCCACTGGAGATTTGGTGTTGACTTTCTTGTGGGTCTTCTTTTCCTCCATGTTGGGGTTGGCCACCGATGTCATAACAAAAGCGCTTGAAATTCATCATGTGTCCTACAATGGTTTTCATTACGCTGACGCTGTTGTCATCACTTCGCTCATCTTTATCCTCGTTACCATCTTCACCTTCATTGCCGATGCCTTGGGCGGTGCCAGCTTCAACCCCACCGGTAATGCTTCACTCTACGCCGCTGGTGTTGGTGATGACACCCTTTTCTCAATGGCTCTCCGGTTCCCTGCTCAGGTACTGGGTTCAGTGGGTGGTGTTCTGGCTGTTATGGAGTATATGCCAGAGAAATATAGGCACTTCATTGCTGGGCCTTCTTTGAAGGTTAGCTTGCATACTGGAGCTCTAGCAGAAGGGGTGCTGACATTTGTGATCACATTTCTTGTTCTCCTCATCATGATCAGGGGTCCTCACAGTGGCACCGCAAAGACTTTGTTGCTGGCAATCTCGACTGTGGTTTTGATCACTGTTGGTGCTAGTTACACTGGACCAGCTATGAACCCTGCCTTTGCATTTGGTTGGGCATACTTTGAGAAATGGCACGACAAATGGGACCACTTCTATGTATACTGGATCTGCCCATTCGTTGGATCAATACTAGCCGCATGGCTGTTCCGTATTGTCTTTCCCCCACCACCACCAGTAGAAAAACAGAAGAAAGCCTGA 744 0.4812 MVSAIKAATGDLVLTFLWVFFSSMLGLATDVITKALEIHHVSYNGFHYADAVVITSLIFILVTIFTFIADALGGASFNPTGNASLYAAGVGDDTLFSMALRFPAQVLGSVGGVLAVMEYMPEKYRHFIAGPSLKVSLHTGALAEGVLTFVITFLVLLIMIRGPHSGTAKTLLLAISTVVLITVGASYTGPAMNPAFAFGWAYFEKWHDKWDHFYVYWICPFVGSILAAWLFRIVFPPPPPVEKQKKA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g1248 247 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Vra1g1248 247 Pfam Major intrinsic protein 3 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PANTHER AQUAPORIN SIP1-1 3 246 - -
Vra1g1248 247 SUPERFAMILY Aquaporin-like 4 241 IPR023271 -
Vra1g1248 247 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g1248 247 PANTHER AQUAPORIN SIP1-1 3 246 IPR044222 GO:0015250
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g1248 Vra-Chr1 17461984 17466599 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g1248 2 246 Major Intrinsic Protein MIP AT5G18290 52.846 5.73e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g1248 K09875 - gmx:100803227 394.815